C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptic Ras GTPase activating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000137880 SYNGAP1 (1 of 2)-001 ENSDARG00000063713 7955 + 19:242398-286664 protein_coding

Danio rerio EnsemblZv9

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyENSDART00000137880
Transcript ID Brain Heart Kidney
ENSDART00000137880 18.018±0.00 0.082±0.00 0.070±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0007165 IEA signal transduction
GO:0051056 IEA regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259371 DAB2IP-201 protein_coding Homo_sapiens 0 531
ENST00000293748 SYNGAP1-004 nonsense_mediated_decay Homo_sapiens 0 632
ENST00000309989 DAB2IP-004 protein_coding Homo_sapiens 0 527
ENST00000355818 SYNGAP1-006 protein_coding Homo_sapiens 0 198
ENST00000373782 DAB2IP-010 protein_coding Homo_sapiens 0 531
ENST00000395071 SYNGAP1-004 protein_coding Homo_sapiens 0 627
ENST00000408936 DAB2IP-009 protein_coding Homo_sapiens 0 531
ENST00000414753 SYNGAP1-003 protein_coding Homo_sapiens 0 627
ENST00000418600 SYNGAP1-001 protein_coding Homo_sapiens 0 632
ENST00000428982 SYNGAP1-003 protein_coding Homo_sapiens 0 632
ENST00000449372 SYNGAP1-009 protein_coding Homo_sapiens 0 632
ENST00000455687 SYNGAP1-001 protein_coding Homo_sapiens 0 627

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