C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptic Ras GTPase activating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000449372 SYNGAP1-009 ENSG00000197283 9606 + 6:33420255-33447933 protein_coding

Homo sapiens EnsemblGRCh38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLungOvaryPlacentaENST00000449372
Transcript ID Adrenal Bladder Brain Breast Colon Heart Lung Ovary Placenta
ENST00000449372 1.274±0.00 0.359±0.00 0.753±0.00 1.055±0.00 0.136±0.00 0.074±0.00 0.361±0.00 0.335±0.00 0.272±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000253 CIL_000253_0001 CGP 6:33416442-33453689
CIL_000254 CIL_000254_0001 CGP 6:33420070-33457548

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0007165 IEA signal transduction
GO:0032318 IEA regulation of Ras GTPase activity
GO:0043547 IEA positive regulation of GTPase activity
GO:0051056 IEA regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000177932 Syngap1-202 protein_coding Mus_musculus 0 3314
ENSMUST00000081285 Syngap1-201 protein_coding Mus_musculus 0 2826
ENSDART00000093368 SYNGAP1 (1 of 2)-201 protein_coding Danio_rerio 0 632
ENSDART00000137880 SYNGAP1 (1 of 2)-001 protein_coding Danio_rerio 0 632

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