C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptic Ras GTPase activating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428982 SYNGAP1-003 ENSG00000197283 9606 + 6:33431731-33452210 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENST00000428982
Transcript ID Brain
ENST00000428982 0.514±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000253 CIL_000253_0001 CGP 6:33416442-33453689
CIL_000254 CIL_000254_0001 CGP 6:33420070-33457548

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005099 IBA Ras GTPase activator activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005737 IBA cytoplasm
GO:0007165 IEA signal transduction
GO:0017124 IEA SH3 domain binding
GO:0031235 IBA intrinsic component of the cytoplasmic side of the plasma membrane
GO:0032318 IEA regulation of Ras GTPase activity
GO:0032320 IBA positive regulation of Ras GTPase activity
GO:0046580 ISS negative regulation of Ras protein signal transduction
GO:0048167 ISS regulation of synaptic plasticity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000081285 Syngap1-201 protein_coding Mus_musculus 0 5446
ENSMUST00000177932 Syngap1-202 protein_coding Mus_musculus 0 4964
ENSDART00000093368 SYNGAP1 (1 of 2)-201 protein_coding Danio_rerio 0 632
ENSDART00000137880 SYNGAP1 (1 of 2)-001 protein_coding Danio_rerio 0 632

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