C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000584668 SRSF1-008 ENSG00000136450 9606 - 17:58003802-58006405 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLungOvaryPlacentaTestisENST00000584668
Transcript ID Adrenal Breast Colon Kidney Lung Ovary Placenta Testis
ENST00000584668 33.260±0.00 27.532±0.00 26.603±0.00 42.232±0.00 28.600±0.00 56.628±6.16 23.840±0.00 43.724±8.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PL CIL_0007PL_0001 UCNEbase 17:57406597-58005077
CIL_0009DM CIL_0009DM_0001 VISTA 17:57461902-58063720
CIL_0009DL CIL_0009DL_0001 VISTA 17:57574410-58175690

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000107920 Srsf1-006 protein_coding Mus_musculus 0 848
ENSMUST00000183352 SRSF1-201 protein_coding Mus_musculus 0 728
ENSMUST00000139129 Srsf1-001 protein_coding Mus_musculus 0 728
ENSMUST00000134824 Srsf1-002 nonsense_mediated_decay Mus_musculus 0 558
ENSMUST00000172186 Srsf1-005 nonsense_mediated_decay Mus_musculus 0 490
ENSMUST00000079866 Srsf1-003 protein_coding Mus_musculus 0 379
ENSMUST00000132983 Srsf1-004 retained_intron Mus_musculus 0 375
ENSDART00000080413 srsf1a-001 protein_coding Danio_rerio 0 315
ENSDART00000151683 srsf1b-003 nonsense_mediated_decay Danio_rerio 0 298
ENSDART00000143566 srsf1b-001 protein_coding Danio_rerio 0 298
ENSDART00000110646 srsf1b-201 protein_coding Danio_rerio 0 296
ENSDART00000140865 srsf1b-002 protein_coding Danio_rerio 0 219
ENSDART00000133755 srsf1a-004 protein_coding Danio_rerio 0 217
ENSDART00000137058 srsf1a-003 retained_intron Danio_rerio 0 195

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