Transcript ID | Heart | Liver |
---|---|---|
ENST00000581979 | 4.655±0.00 | 14.002±0.00 |
Transcript Info |
||||||
Description: | serine/arginine-rich splicing factor 1 | |||||
---|---|---|---|---|---|---|
Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000581979 | SRSF1-004 | ENSG00000136450 | 9606 | - | 17:58003807-58007232 | nonsense_mediated_decay |
Expression Patterns
|
Conserved Regions | |||
---|---|---|---|
Region ID | Sub-Region | Region Type | Position |
CIL_0007PL | CIL_0007PL_0001 | UCNEbase | 17:57406597-58005077 |
CIL_0009DM | CIL_0009DM_0001 | VISTA | 17:57461902-58063720 |
CIL_0009DL | CIL_0009DL_0001 | VISTA | 17:57574410-58175690 |
Gene Ontology | ||
---|---|---|
GO ID | Evidence Type | GO Description |
GO:0000166 | IEA | nucleotide binding |
GO:0000395 | IDA | mRNA 5'-splice site recognition |
GO:0000398 | IC | mRNA splicing, via spliceosome |
GO:0003676 | IEA | nucleic acid binding |
GO:0003723 | IDA | RNA binding |
GO:0003729 | IDA | mRNA binding |
GO:0005515 | IPI | protein binding |
GO:0005634 | IDA | nucleus |
GO:0005654 | IDA | nucleoplasm |
GO:0005737 | IEA | cytoplasm |
GO:0006355 | IEA | regulation of transcription, DNA-templated |
GO:0006366 | TAS | transcription from RNA polymerase II promoter |
GO:0006369 | TAS | termination of RNA polymerase II transcription |
GO:0006376 | TAS | mRNA splice site selection |
GO:0006397 | TAS | mRNA processing |
GO:0006406 | TAS | mRNA export from nucleus |
GO:0006417 | IEA | regulation of translation |
GO:0008380 | TAS | RNA splicing |
GO:0010467 | TAS | gene expression |
GO:0016607 | IDA | nuclear speck |
GO:0031124 | TAS | mRNA 3'-end processing |
GO:0035145 | IDA | exon-exon junction complex |
GO:0043488 | IEA | regulation of mRNA stability |
GO:0044822 | IDA | poly(A) RNA binding |
GO:0048024 | IEA | regulation of mRNA splicing, via spliceosome |
GO:0070062 | IDA | extracellular vesicular exosome |
GO:0071013 | IDA | catalytic step 2 spliceosome |
Homologs | |||||
ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
ENSMUST00000079866 | Srsf1-003 | protein_coding | Mus_musculus | 0 | 2191 |
ENSMUST00000132983 | Srsf1-004 | retained_intron | Mus_musculus | 0 | 1297 |
ENSMUST00000183352 | SRSF1-201 | protein_coding | Mus_musculus | 0 | 1166 |
ENSMUST00000139129 | Srsf1-001 | protein_coding | Mus_musculus | 0 | 1166 |
ENSMUST00000107920 | Srsf1-006 | protein_coding | Mus_musculus | 0 | 804 |
ENSMUST00000134824 | Srsf1-002 | nonsense_mediated_decay | Mus_musculus | 0 | 551 |
ENSMUST00000171976 | Srsf1-007 | retained_intron | Mus_musculus | 0 | 523 |
ENSMUST00000172186 | Srsf1-005 | nonsense_mediated_decay | Mus_musculus | 0 | 492 |
ENSDART00000140865 | srsf1b-002 | protein_coding | Danio_rerio | 0 | 383 |
ENSDART00000110646 | srsf1b-201 | protein_coding | Danio_rerio | 0 | 375 |
ENSDART00000151683 | srsf1b-003 | nonsense_mediated_decay | Danio_rerio | 0 | 375 |
ENSDART00000143566 | srsf1b-001 | protein_coding | Danio_rerio | 0 | 375 |
ENSDART00000080413 | srsf1a-001 | protein_coding | Danio_rerio | 0 | 237 |
ENSDART00000133755 | srsf1a-004 | protein_coding | Danio_rerio | 0 | 235 |
ENSDART00000137058 | srsf1a-003 | retained_intron | Danio_rerio | 0 | 206 |