C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | serine hydroxymethyltransferase 1 (soluble) | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSDART00000141578  |
shmt1-003 |
ENSDARG00000052816 |
7955 | - |
3:40263106-40269878  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00058O | CIL_00058O_0001 | CGP | 3:40250190-40270853 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0004372 | IEA | glycine hydroxymethyltransferase activity |
| GO:0006544 | IEA | glycine metabolic process |
| GO:0006563 | IEA | L-serine metabolic process |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000316694
|
SHMT1-001 | protein_coding | Homo_sapiens | 0 | 396 |
|
ENST00000352886
|
SHMT1-201 | protein_coding | Homo_sapiens | 0 | 298 |
|
ENST00000354098
|
SHMT1-003 | protein_coding | Homo_sapiens | 0 | 396 |
|
ENST00000419974
|
SHMT1P1-001 | processed_pseudogene | Homo_sapiens | 0 | 303 |
|
ENST00000579558
|
SHMT1-008 | retained_intron | Homo_sapiens | 0 | 285 |
|
ENST00000580002
|
SHMT1-006 | nonsense_mediated_decay | Homo_sapiens | 0 | 298 |
|
ENST00000582653
|
SHMT1-009 | protein_coding | Homo_sapiens | 0 | 220 |
