C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine hydroxymethyltransferase 1 (soluble)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000580002 SHMT1-006 ENSG00000176974 9606 - 17:18328470-18363495 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyTestisENST00000580002
Transcript ID Colon Kidney Testis
ENST00000580002 3.097±0.00 14.784±0.00 7.733±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058O CIL_00058O_0002 CGP 17:18315310-18363563

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004372 IEA glycine hydroxymethyltransferase activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006508 IEA proteolysis
GO:0006544 IEA glycine metabolic process
GO:0006563 IEA L-serine metabolic process
GO:0008242 IEA omega peptidase activity
GO:0030170 IEA pyridoxal phosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174174 Shmt1-007 nonsense_mediated_decay Mus_musculus 0 1389
ENSMUST00000018744 Shmt1-001 protein_coding Mus_musculus 0 1155
ENSMUST00000174093 Shmt1-005 processed_transcript Mus_musculus 0 950
ENSMUST00000174214 Shmt1-010 protein_coding Mus_musculus 0 942
ENSMUST00000174719 Shmt1-006 protein_coding Mus_musculus 0 577
ENSMUST00000173260 Shmt1-004 retained_intron Mus_musculus 0 575
ENSMUST00000172804 Shmt1-011 retained_intron Mus_musculus 0 562
ENSMUST00000124227 Shmt1-003 retained_intron Mus_musculus 0 488
ENSDART00000074737 shmt1-001 protein_coding Danio_rerio 0 484
ENSDART00000141578 shmt1-003 protein_coding Danio_rerio 0 298
ENSDART00000132225 shmt1-002 protein_coding Danio_rerio 0 281
ENSMUST00000173698 Shmt1-008 processed_transcript Mus_musculus 0 235

Loading