C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-B-cell leukemia transcription factor 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000156935 pbx4-002 ENSDARG00000052150 7955 + 3:53690791-53712514 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENSDART00000156935
Transcript ID Liver
ENSDART00000156935 0.389±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NP CIL_0004NP_0001 CGP 3:53637984-53730531

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000064438 Pbx1-005 protein_coding Mus_musculus 0 285
ENSMUST00000072863 Pbx1-201 protein_coding Mus_musculus 0 331
ENSMUST00000176540 Pbx1-002 protein_coding Mus_musculus 0 331
ENSMUST00000176790 Pbx1-004 protein_coding Mus_musculus 0 331
ENSMUST00000188912 Pbx1-001 protein_coding Mus_musculus 0 331
ENST00000367897 PBX1-002 protein_coding Homo_sapiens 0 309
ENST00000420696 PBX1-001 protein_coding Homo_sapiens 0 309
ENST00000468104 PBX1-004 processed_transcript Homo_sapiens 0 309
ENST00000482110 PBX1-009 protein_coding Homo_sapiens 2e-37 159
ENST00000496120 PBX1-016 processed_transcript Homo_sapiens 0 309
ENST00000540236 PBX1-201 protein_coding Homo_sapiens 0 309
ENST00000558837 PBX1-019 protein_coding Homo_sapiens 6.99949e-42 174
ENST00000559240 PBX1-012 protein_coding Homo_sapiens 0 263
ENST00000559578 PBX1-013 protein_coding Homo_sapiens 2e-37 159
ENST00000560469 PBX1-015 processed_transcript Homo_sapiens 0 309
ENST00000560641 PBX1-017 protein_coding Homo_sapiens 0 309
ENST00000612123 PBX1-202 protein_coding Homo_sapiens 0 309

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