C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | pre-B-cell leukemia homeobox 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000559240  |
PBX1-012 |
ENSG00000185630 |
9606 | + |
1:164559823-164848522  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0007M6 | CIL_0007M6_0001 | UCNEbase | 1:164054328-164712505 |
| CIL_0007US | CIL_0007US_0001 | VISTA | 1:164334904-164936237 |
| CIL_0008NA | CIL_0008NA_0001 | VISTA | 1:164350801-164951927 |
| CIL_0009AB | CIL_0009AB_0001 | VISTA | 1:164368338-164969800 |
| CIL_00096W | CIL_00096W_0001 | VISTA | 1:164399355-165000586 |
| CIL_00089R | CIL_00089R_0001 | VISTA | 1:164403550-165004969 |
| CIL_0008FU | CIL_0008FU_0001 | VISTA | 1:164431022-165032285 |
| CIL_00094F | CIL_00094F_0001 | VISTA | 1:164536270-165137557 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003677 | IEA | DNA binding |
| GO:0003700 | IEA | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | IDA:IEA | nucleus |
| GO:0006355 | IEA | regulation of transcription, DNA-templated |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000064438
|
Pbx1-005 | protein_coding | Mus_musculus | 0 | 1607 |
|
ENSMUST00000072863
|
Pbx1-201 | protein_coding | Mus_musculus | 0 | 1279 |
|
ENSMUST00000176790
|
Pbx1-004 | protein_coding | Mus_musculus | 0 | 1279 |
|
ENSMUST00000176540
|
Pbx1-002 | protein_coding | Mus_musculus | 0 | 1279 |
|
ENSMUST00000188912
|
Pbx1-001 | protein_coding | Mus_musculus | 0 | 1279 |
|
ENSMUST00000176482
|
Pbx1-006 | retained_intron | Mus_musculus | 0 | 784 |
|
ENSDART00000129503
|
pbx1b-203 | protein_coding | Danio_rerio | 0 | 684 |
|
ENSDART00000122028
|
pbx1b-201 | protein_coding | Danio_rerio | 0 | 684 |
|
ENSDART00000125538
|
pbx1b-202 | protein_coding | Danio_rerio | 0 | 684 |
|
ENSMUST00000097471
|
Pbx1-009 | processed_transcript | Mus_musculus | 0 | 675 |
|
ENSDART00000104683
|
pbx4-001 | protein_coding | Danio_rerio | 0 | 479 |
|
ENSMUST00000176791
|
Pbx1-007 | retained_intron | Mus_musculus | 0 | 462 |
|
ENSDART00000003750
|
pbx1a-201 | protein_coding | Danio_rerio | 0 | 425 |
|
ENSDART00000073947
|
pbx1a-203 | protein_coding | Danio_rerio | 0 | 425 |
|
ENSDART00000100074
|
pbx3a-201 | protein_coding | Danio_rerio | 0 | 407 |
|
ENSDART00000127078
|
PBX4 (2 of 2)-201 | protein_coding | Danio_rerio | 0 | 387 |
|
ENSDART00000038419
|
pbx1a-202 | protein_coding | Danio_rerio | 0 | 311 |
|
ENSDART00000156935
|
pbx4-002 | protein_coding | Danio_rerio | 0 | 263 |
