C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: huntingtin interacting protein 1 related
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000939 Hip1r-001 ENSMUSG00000000915 10090 + 5:123973628-124003211 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000939
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000939 4.697±0.40 4.067±0.91 28.272±1.47 14.866±8.31 12.541±6.30 15.444±0.96 3.384±0.42 10.764±0.39 7.612±2.32 16.552±0.62 2.728±0.68 12.724±2.24 17.451±4.51 6.998±0.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0002 VISTA 5:123871507-124476501
CIL_0001EI CIL_0001EI_0002 CGP 5:123927418-124003211
CIL_0002PB CIL_0002PB_0002 CGP 5:123973628-124032260

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IDA cytoskeleton
GO:0005905 IDA coated pit
GO:0006898 ISS receptor-mediated endocytosis
GO:0016020 IEA membrane
GO:0030136 ISS clathrin-coated vesicle
GO:0035091 ISS phosphatidylinositol binding
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000127041 hip1rb-201 protein_coding Danio_rerio 0 207
ENSDART00000133846 hip1rb-001 protein_coding Danio_rerio 0 202
ENST00000253083 HIP1R-001 protein_coding Homo_sapiens 0 3672
ENST00000452196 HIP1R-003 retained_intron Homo_sapiens 0 2117
ENST00000535012 HIP1R-010 protein_coding Homo_sapiens 0 608
ENST00000535831 HIP1R-004 retained_intron Homo_sapiens 0 1953
ENST00000536617 HIP1R-002 retained_intron Homo_sapiens 0 837
ENST00000536772 HIP1R-007 retained_intron Homo_sapiens 0 651
ENST00000536847 HIP1R-008 retained_intron Homo_sapiens 0 839
ENST00000538236 HIP1R-009 retained_intron Homo_sapiens 0 405
ENST00000541712 HIP1R-006 retained_intron Homo_sapiens 0 486

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