C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 46 (folate transporter), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000612814 SLC46A1-001 ENSG00000076351 9606 - 17:28394756-28406210 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartLungMuscleOvaryPlacentaENST00000612814
Transcript ID Bladder Brain Heart Lung Muscle Ovary Placenta
ENST00000612814 1.621±0.00 2.905±0.00 0.350±0.00 0.940±0.21 0.925±0.00 1.941±1.16 4.794±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FM CIL_0000FM_0002 CGP 17:28364356-28404049

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005542 IEA folic acid binding
GO:0005737 ISS cytoplasm
GO:0005886 TAS plasma membrane
GO:0006766 TAS vitamin metabolic process
GO:0006767 TAS water-soluble vitamin metabolic process
GO:0006879 TAS cellular iron ion homeostasis
GO:0008517 IDA folic acid transporter activity
GO:0009986 IDA cell surface
GO:0015232 IEA heme transporter activity
GO:0015350 IEA methotrexate transporter activity
GO:0015884 IDA folic acid transport
GO:0015886 IEA heme transport
GO:0016021 IEA integral component of membrane
GO:0016324 IDA apical plasma membrane
GO:0031526 IEA brush border membrane
GO:0044281 TAS small molecule metabolic process
GO:0046655 TAS folic acid metabolic process
GO:0051958 IEA methotrexate transport
GO:0055085 IEA:TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001126 Slc46a1-001 protein_coding Mus_musculus 0 1363
ENSMUST00000146431 Slc46a1-002 nonsense_mediated_decay Mus_musculus 0 357
ENSMUST00000180786 Slc46a1-003 retained_intron Mus_musculus 0 206
ENSMUST00000061174 Sarm1-001 protein_coding Mus_musculus 8.99998e-41 174
ENSMUST00000153534 Sarm1-003 retained_intron Mus_musculus 8.99998e-41 174
ENSMUST00000108287 Sarm1-002 protein_coding Mus_musculus 8.99998e-41 174
ENSMUST00000074912 2010012O05Rik-201 protein_coding Mus_musculus 0.0000002 64

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