C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 46 (folate transporter), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000618626 SLC46A1-002 ENSG00000076351 9606 - 17:28395676-28406201 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLungMuscleOvaryPlacentaENST00000618626
Transcript ID Adipose Breast Colon Heart Kidney Lung Muscle Ovary Placenta
ENST00000618626 1.314±0.00 0.722±0.00 1.366±0.49 3.217±0.00 3.937±0.00 1.349±0.61 0.641±0.00 4.212±2.63 4.564±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FM CIL_0000FM_0002 CGP 17:28364356-28404049

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005542 IEA folic acid binding
GO:0005737 ISS cytoplasm
GO:0005886 TAS plasma membrane
GO:0006766 TAS vitamin metabolic process
GO:0006767 TAS water-soluble vitamin metabolic process
GO:0006879 TAS cellular iron ion homeostasis
GO:0008517 IDA folic acid transporter activity
GO:0009986 IDA cell surface
GO:0015884 IDA folic acid transport
GO:0016021 IEA integral component of membrane
GO:0016324 IDA apical plasma membrane
GO:0044281 TAS small molecule metabolic process
GO:0046655 TAS folic acid metabolic process
GO:0055085 IEA:TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001126 Slc46a1-001 protein_coding Mus_musculus 0 1013
ENSMUST00000146431 Slc46a1-002 nonsense_mediated_decay Mus_musculus 0 278
ENSMUST00000180786 Slc46a1-003 retained_intron Mus_musculus 0 209
ENSMUST00000061174 Sarm1-001 protein_coding Mus_musculus 7.00005e-41 174
ENSMUST00000153534 Sarm1-003 retained_intron Mus_musculus 7.00005e-41 174
ENSMUST00000108287 Sarm1-002 protein_coding Mus_musculus 7.00005e-41 174

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