C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sterile alpha and TIR motif containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000585482 SARM1-001 ENSG00000004139 9606 + 17:28371662-28404049 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonENST00000585482
Transcript ID Brain Colon
ENST00000585482 0.872±0.00 0.273±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000FM CIL_0000FM_0002 CGP 17:28364356-28404049

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002224 TAS toll-like receptor signaling pathway
GO:0002756 TAS MyD88-independent toll-like receptor signaling pathway
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0005739 IDA mitochondrion
GO:0005829 TAS cytosol
GO:0005874 ISS microtubule
GO:0007165 IEA signal transduction
GO:0009749 IEA response to glucose
GO:0015630 IEA microtubule cytoskeleton
GO:0030054 IEA cell junction
GO:0030425 ISS dendrite
GO:0031315 IEA extrinsic component of mitochondrial outer membrane
GO:0034138 TAS toll-like receptor 3 signaling pathway
GO:0034142 TAS toll-like receptor 4 signaling pathway
GO:0042981 IEA regulation of apoptotic process
GO:0045087 TAS innate immune response
GO:0045202 ISS synapse
GO:0048814 ISS regulation of dendrite morphogenesis
GO:1901214 ISS regulation of neuron death

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000061174 Sarm1-001 protein_coding Mus_musculus 0 2665
ENSMUST00000108287 Sarm1-002 protein_coding Mus_musculus 0 1953
ENSMUST00000153534 Sarm1-003 retained_intron Mus_musculus 0 665
ENSMUST00000180786 Slc46a1-003 retained_intron Mus_musculus 0 231
ENSMUST00000146431 Slc46a1-002 nonsense_mediated_decay Mus_musculus 0 206
ENSMUST00000001126 Slc46a1-001 protein_coding Mus_musculus 0 206

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