C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: calmodulin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001204 Calm1-002 ENSMUSG00000001175 10090 + 12:100200144-100209806 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000001204
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000001204 60.284±0.00 22.009±9.47 55.312±0.00 28.654±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U8 CIL_0001U8_0002 CGP 12:100125452-100209806
CIL_0005CA CIL_0005CA_0002 CGP 12:100199435-100520822

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356978 CALM1-001 protein_coding Homo_sapiens 0 1520
ENST00000442082 CALM1P1-001 processed_pseudogene Homo_sapiens 0 453
ENST00000447653 CALM1-004 protein_coding Homo_sapiens 0 1077
ENST00000544280 CALM1-006 protein_coding Homo_sapiens 0 1125
ENST00000553422 CALM1-013 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000553542 CALM1-012 protein_coding Homo_sapiens 0 1038
ENST00000553630 CALM1-003 nonsense_mediated_decay Homo_sapiens 0 1066
ENST00000553964 CALM1-005 retained_intron Homo_sapiens 0 776
ENST00000553995 CALM1-010 retained_intron Homo_sapiens 0 385
ENST00000554296 CALM1-014 retained_intron Homo_sapiens 0 449
ENST00000555267 CALM1-011 retained_intron Homo_sapiens 0 385
ENST00000556721 CALM1-015 retained_intron Homo_sapiens 0 368
ENST00000556757 CALM1-009 retained_intron Homo_sapiens 0 243
ENST00000557020 CALM1-007 protein_coding Homo_sapiens 0 562

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