C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal sequence receptor, delta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002090 Ssr4-001 ENSMUSG00000002014 10090 + X:73787062-73790826 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002090
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002090 23.297±3.47 44.050±4.63 29.974±6.96 10.038±4.72 23.932±2.94 44.797±7.58 11.055±2.43 28.898±1.63 50.069±10.16 23.415±3.99 12.628±1.89 28.274±4.60 64.778±16.24 3.288±1.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UU CIL_0001UU_0002 CGP X:73778963-73790830
CIL_0001UT CIL_0001UT_0002 CGP X:73787028-73824969

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005783 IEA endoplasmic reticulum
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320857 SSR4-005 protein_coding Homo_sapiens 0 623
ENST00000370085 SSR4-001 protein_coding Homo_sapiens 0 213
ENST00000370086 SSR4-006 protein_coding Homo_sapiens 0 630
ENST00000370087 SSR4-009 protein_coding Homo_sapiens 0 619
ENST00000460616 SSR4-008 processed_transcript Homo_sapiens 0 396
ENST00000471724 SSR4-011 processed_transcript Homo_sapiens 2.94273e-44 182
ENST00000471880 SSR4-012 processed_transcript Homo_sapiens 0 531
ENST00000482902 SSR4-007 processed_transcript Homo_sapiens 3e-21 108
ENST00000485612 SSR4-003 processed_transcript Homo_sapiens 0 532
ENST00000486204 SSR4-002 processed_transcript Homo_sapiens 0 532
ENST00000491833 SSR4-010 processed_transcript Homo_sapiens 2e-20 104

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