C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein D1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002551 Snrpd1-201 ENSMUSG00000002477 10090 + 18:10617796-10628230 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002551
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002551 8.659±3.73 1.646±0.59 10.906±4.60 26.792±0.66 3.795±1.81 2.724±1.05 4.109±0.50 6.834±1.36 28.683±30.47 6.008±1.20 7.006±0.51 14.596±17.12 72.193±38.37 17.078±11.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084R CIL_00084R_0002 VISTA 18:10435381-11036621
CIL_0005CM CIL_0005CM_0002 CGP 18:10566602-10628230
CIL_0005NW CIL_0005NW_0002 CGP 18:10617796-10706771

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000387 ISS spliceosomal snRNP assembly
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005685 ISS U1 snRNP
GO:0005687 ISS U4 snRNP
GO:0005689 IEA U12-type spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0005829 ISS cytosol
GO:0034709 ISS methylosome
GO:0034715 ISS pICln-Sm protein complex
GO:0034719 ISS SMN-Sm protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000300413 SNRPD1-001 protein_coding Homo_sapiens 0 676
ENST00000402743 RP11-570P14.1-001 processed_pseudogene Homo_sapiens 0 532
ENST00000549647 RP11-248E9.7-001 processed_pseudogene Homo_sapiens 0 351
ENST00000579618 SNRPD1-003 protein_coding Homo_sapiens 1.00053e-42 176
ENST00000582475 SNRPD1-002 protein_coding Homo_sapiens 0 505

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