C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase, interferon inducible double stranded RNA dependent activator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002808 Prkra-001 ENSMUSG00000002731 10090 - 2:76629898-76648015 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002808
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002808 14.827±0.82 27.433±5.54 16.499±1.90 23.843±14.64 8.979±3.28 18.345±6.06 5.199±0.63 9.605±1.26 7.940±1.99 8.517±2.51 1.666±0.28 19.606±6.57 5.511±2.81 7.038±4.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Z1 CIL_0000Z1_0002 CGP 2:76406508-76648015
CIL_0000Z0 CIL_0000Z0_0002 CGP 2:76629898-76658556

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005737 ISS cytoplasm
GO:0006468 IDA protein phosphorylation
GO:0016020 IEA membrane
GO:0030422 ISS production of siRNA involved in RNA interference
GO:0034599 IDA cellular response to oxidative stress
GO:0042473 IMP outer ear morphogenesis
GO:0042474 IMP middle ear morphogenesis
GO:0042803 IEA protein homodimerization activity
GO:0044822 IEA poly(A) RNA binding
GO:0048705 IMP skeletal system morphogenesis
GO:2001244 IDA positive regulation of intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325748 PRKRA-001 protein_coding Homo_sapiens 0 1415
ENST00000424699 PRKRA-002 nonsense_mediated_decay Homo_sapiens 0 893
ENST00000432031 PRKRA-009 protein_coding Homo_sapiens 0 1181
ENST00000442762 DASS-23B5.1-001 processed_pseudogene Homo_sapiens 0 1194
ENST00000443336 DASS-23B5.1-001 processed_pseudogene Homo_sapiens 0 1203
ENST00000448279 PRKRA-011 nonsense_mediated_decay Homo_sapiens 0 405
ENST00000457633 PRKRA-008 protein_coding Homo_sapiens 0 405
ENST00000460433 PRKRA-010 processed_transcript Homo_sapiens 0 405
ENST00000463882 PRKRA-006 retained_intron Homo_sapiens 0 398
ENST00000466165 PRKRA-007 retained_intron Homo_sapiens 0 523
ENST00000470200 PRKRA-005 processed_transcript Homo_sapiens 0 481
ENST00000474793 PRKRA-012 retained_intron Homo_sapiens 0 425
ENST00000487082 PRKRA-003 protein_coding Homo_sapiens 0 1186
ENST00000490501 PRKRA-004 retained_intron Homo_sapiens 0 797

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