C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000004430 Clcn3-002 ENSMUSG00000004319 10090 - 8:60911923-60983239 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverOvaryPlacentaTestisENSMUST00000004430
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000004430 1.452±0.46 2.567±0.00 2.419±0.51 2.538±0.42 3.744±1.55 2.633±0.74 2.986±1.35 2.812±0.00 2.061±0.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005244 IEA voltage-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005769 IEA early endosome
GO:0005770 IEA late endosome
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006811 IEA ion transport
GO:0012506 IEA vesicle membrane
GO:0016021 IEA integral component of membrane
GO:0016324 IEA apical plasma membrane
GO:0030165 IEA PDZ domain binding
GO:0030554 IEA adenyl nucleotide binding
GO:0034220 IEA ion transmembrane transport
GO:0034765 IEA regulation of ion transmembrane transport
GO:0044070 IEA regulation of anion transport
GO:0046982 IEA protein heterodimerization activity
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000123469 clcn3-203 protein_coding Danio_rerio 0 1245
ENST00000347613 CLCN3-002 protein_coding Homo_sapiens 0 3962
ENST00000360642 CLCN3-004 protein_coding Homo_sapiens 0 1980
ENST00000423965 CLCN3P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 638
ENST00000504131 CLCN3-201 protein_coding Homo_sapiens 0 3158
ENST00000507875 CLCN3-005 protein_coding Homo_sapiens 0 3007
ENST00000511092 CLCN3-006 protein_coding Homo_sapiens 0 688
ENST00000512813 CLCN3-007 protein_coding Homo_sapiens 0 556
ENST00000513761 CLCN3-001 protein_coding Homo_sapiens 0 3426
ENST00000515420 CLCN3-009 protein_coding Homo_sapiens 0 817
ENST00000609203 CLCN3P1-002 processed_transcript Homo_sapiens 0 209
ENST00000613795 CLCN3-202 protein_coding Homo_sapiens 0 3158

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