C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel, voltage-sensitive 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360642 CLCN3-004 ENSG00000109572 9606 + 4:169620529-169720278 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaENST00000360642
Transcript ID Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000360642 2.114±0.00 5.913±0.00 2.876±0.00 4.110±0.00 2.050±0.00 6.384±0.00 5.542±0.00 1.588±0.00 3.386±0.00 1.434±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0005247 IEA voltage-gated chloride channel activity
GO:0005254 TAS chloride channel activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005769 IDA early endosome
GO:0005770 IDA late endosome
GO:0005794 IDA Golgi apparatus
GO:0006810 TAS transport
GO:0006821 IEA chloride transport
GO:0006885 TAS regulation of pH
GO:0009986 NAS cell surface
GO:0012506 IDA vesicle membrane
GO:0015297 IEA antiporter activity
GO:0016020 IDA:IEA membrane
GO:0016021 TAS integral component of membrane
GO:0030165 IDA PDZ domain binding
GO:0031410 IEA cytoplasmic vesicle
GO:0034220 TAS ion transmembrane transport
GO:0042803 NAS protein homodimerization activity
GO:0044070 IEA regulation of anion transport
GO:0046982 IDA protein heterodimerization activity
GO:0048388 TAS endosomal lumen acidification
GO:0055085 TAS:IEA transmembrane transport
GO:1902476 TAS chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110301 Clcn3-004 protein_coding Mus_musculus 0 2265
ENSMUST00000056508 Clcn3-003 protein_coding Mus_musculus 0 2265
ENSMUST00000093490 Clcn3-001 protein_coding Mus_musculus 0 2265
ENSMUST00000110302 Clcn3-006 protein_coding Mus_musculus 0 1980
ENSMUST00000004430 Clcn3-002 protein_coding Mus_musculus 0 1980
ENSMUST00000129672 Clcn3-010 retained_intron Mus_musculus 0 1195
ENSMUST00000132234 Clcn3-009 retained_intron Mus_musculus 0 1085
ENSMUST00000147824 Clcn3-008 retained_intron Mus_musculus 0 857
ENSMUST00000145741 Clcn3-005 processed_transcript Mus_musculus 0 553
ENSMUST00000145493 Clcn3-007 retained_intron Mus_musculus 0 479

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