C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide E
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000004786 Polr2e-001 ENSMUSG00000004667 10090 - 10:80035949-80039795 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000004786
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000004786 74.301±6.94 44.822±2.24 66.328±16.18 52.639±27.14 53.979±18.30 67.738±8.87 73.516±11.69 92.988±3.27 58.354±35.62 86.455±3.70 22.887±0.92 124.915±47.21 83.526±35.90 39.076±14.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_00030S CIL_00030S_0002 CGP 10:80016653-80039795
CIL_0000QU CIL_0000QU_0002 CGP 10:80035949-80056439

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0001055 IBA RNA polymerase II activity
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005665 ISS DNA-directed RNA polymerase II, core complex
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0005736 IBA DNA-directed RNA polymerase I complex
GO:0006360 IBA transcription from RNA polymerase I promoter
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0006383 IBA transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000035670 polr2eb-001 protein_coding Danio_rerio 0 472
ENSDART00000141439 polr2eb-003 retained_intron Danio_rerio 0 215
ENST00000215587 POLR2E-012 nonsense_mediated_decay Homo_sapiens 0 723
ENST00000525414 RP11-344L21.1-001 processed_pseudogene Homo_sapiens 0 627
ENST00000585838 POLR2E-014 protein_coding Homo_sapiens 0 544
ENST00000586746 POLR2E-010 protein_coding Homo_sapiens 0 819
ENST00000586817 POLR2E-003 retained_intron Homo_sapiens 0 743
ENST00000589737 POLR2E-006 nonsense_mediated_decay Homo_sapiens 0 544
ENST00000590060 POLR2E-007 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000591709 POLR2E-005 retained_intron Homo_sapiens 0 462
ENST00000591767 POLR2E-002 nonsense_mediated_decay Homo_sapiens 0 538
ENST00000592597 POLR2E-004 retained_intron Homo_sapiens 0 281
ENST00000612655 POLR2E-013 protein_coding Homo_sapiens 0 819
ENST00000614705 POLR2E-011 processed_transcript Homo_sapiens 0 684
ENST00000615234 POLR2E-001 protein_coding Homo_sapiens 0 819
ENST00000619917 POLR2E-009 protein_coding Homo_sapiens 0 462

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