C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000QU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000099817-ENSG00000167468 CGP 9606 19:1086579-1106791
GeneTranscriptPositionBiotype
ENSG00000099817 (POLR2E)
polymerase (RNA) II (DNA directed) polypeptide E, 25kDa 		ENST00000215587 (POLR2E-012) 1088163-1095374 nonsense_mediated_decay
ENST00000585838 (POLR2E-014) 1088645-1095261 protein_coding
ENST00000586215 (POLR2E-008) 1088424-1089930 retained_intron
ENST00000586746 (POLR2E-010) 1086579-1095354 protein_coding
ENST00000586817 (POLR2E-003) 1088167-1095375 retained_intron
ENST00000589737 (POLR2E-006) 1088148-1095375 nonsense_mediated_decay
ENST00000590060 (POLR2E-007) 1086595-1092346 nonsense_mediated_decay
ENST00000591709 (POLR2E-005) 1091501-1095361 retained_intron
ENST00000591767 (POLR2E-002) 1088148-1095336 nonsense_mediated_decay
ENST00000592597 (POLR2E-004) 1093730-1095349 retained_intron
ENST00000612655 (POLR2E-013) 1087645-1095380 protein_coding
ENST00000614705 (POLR2E-011) 1089897-1095354 processed_transcript
ENST00000615234 (POLR2E-001) 1086579-1095357 protein_coding
ENST00000619917 (POLR2E-009) 1088388-1095366 protein_coding
ENSG00000167468 (GPX4)
glutathione peroxidase 4 		ENST00000354171 (GPX4-002) 1103937-1106790 protein_coding
ENST00000585362 (GPX4-004) 1104415-1105761 protein_coding
ENST00000585480 (GPX4-008) 1105454-1106779 non_stop_decay
ENST00000587648 (GPX4-009) 1105152-1106564 protein_coding
ENST00000587932 (GPX4-005) 1105253-1105673 retained_intron
ENST00000588919 (GPX4-003) 1104073-1106788 protein_coding
ENST00000589115 (GPX4-007) 1104008-1106779 protein_coding
ENST00000592940 (GPX4-001) 1105156-1106791 retained_intron
ENST00000593032 (GPX4-006) 1104067-1106443 protein_coding
ENST00000611653 (GPX4-011) 1104052-1106779 protein_coding
ENST00000614791 (GPX4-010) 1104706-1105483 protein_coding
ENST00000616066 (GPX4-201) 1103926-1106787 protein_coding
ENST00000622390 (GPX4-202) 1104650-1106787 protein_coding
ENSG00000180448 (HMHA1)
histocompatibility (minor) HA-1 		ENST00000313093 (HMHA1-002) 1067166-1086628 protein_coding
ENST00000539243 (HMHA1-001) 1065923-1086628 protein_coding
ENST00000543365 (HMHA1-004) 1071221-1086628 protein_coding
ENST00000586033 (HMHA1-014) 1073583-1074724 retained_intron
ENST00000586378 (HMHA1-017) 1082784-1085996 retained_intron
ENST00000586866 (HMHA1-007) 1067498-1086628 protein_coding
ENST00000586937 (HMHA1-015) 1081415-1082956 retained_intron
ENST00000587186 (HMHA1-010) 1066509-1073223 protein_coding
ENST00000587602 (HMHA1-006) 1067317-1086628 nonsense_mediated_decay
ENST00000590214 (HMHA1-003) 1067327-1086626 protein_coding
ENST00000590512 (HMHA1-016) 1082521-1083329 processed_transcript
ENST00000590577 (HMHA1-005) 1077487-1086628 protein_coding
ENST00000591169 (HMHA1-012) 1082939-1086628 nonsense_mediated_decay
ENST00000591293 (HMHA1-011) 1067319-1080961 retained_intron
ENST00000592297 (HMHA1-009) 1082841-1086600 retained_intron
ENST00000592335 (HMHA1-013) 1071513-1073549 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0000QU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000004667-ENSMUSG00000075706 CGP 10090 10:80035949-80056439
GeneTranscriptPositionBiotype
ENSMUSG00000004667 (Polr2e)
polymerase (RNA) II (DNA directed) polypeptide E 		ENSMUST00000004786 (Polr2e-001) 80035949-80039795 protein_coding
ENSMUST00000131743 (Polr2e-003) 80035951-80039650 retained_intron
ENSMUST00000143438 (Polr2e-002) 80035949-80039710 retained_intron
ENSMUST00000147507 (Polr2e-004) 80035949-80037185 retained_intron
ENSMUST00000152843 (Polr2e-005) 80036175-80039701 retained_intron
ENSMUSG00000075706 (Gpx4)
glutathione peroxidase 4 		ENSMUST00000097227 (Gpx4-002) 80054037-80056439 protein_coding
ENSMUST00000105372 (Gpx4-001) 80053488-80056439 protein_coding
ENSMUST00000136081 (Gpx4-005) 80055998-80056363 retained_intron
ENSMUST00000144698 (Gpx4-006) 80047166-80056439 processed_transcript
ENSMUST00000145703 (Gpx4-003) 80054035-80055107 processed_transcript
ENSMUST00000154095 (Gpx4-004) 80055894-80056365 retained_intron
ENSMUST00000183037 (Gpx4-007) 80054465-80056394 protein_coding

Mus musculus Ensembl (GRCm38)

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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000QU_0001ENSG00000099817ENST00000215587ENST00000585838ENST00000586215ENST00000586746ENST00000586817ENST00000589737ENST00000590060ENST00000591709ENST00000591767ENST00000592597ENST00000612655ENST00000614705ENST00000615234ENST00000619917ENSG00000167468ENST00000354171ENST00000585362ENST00000585480ENST00000587648ENST00000587932ENST00000588919ENST00000589115ENST00000592940ENST00000593032ENST00000611653ENST00000614791ENST00000616066ENST00000622390ENSG00000180448ENST00000313093ENST00000539243ENST00000543365ENST00000586033ENST00000586378ENST00000586866ENST00000586937ENST00000587186ENST00000587602ENST00000590214ENST00000590512ENST00000590577ENST00000591169ENST00000591293ENST00000592297ENST00000592335CIL_0000QU_0002ENSMUSG00000004667ENSMUST00000004786ENSMUST00000131743ENSMUST00000143438ENSMUST00000147507ENSMUST00000152843ENSMUSG00000075706ENSMUST00000097227ENSMUST00000105372ENSMUST00000136081ENSMUST00000144698ENSMUST00000145703ENSMUST00000154095ENSMUST00000183037
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000QU_0001ENSG00000099817ENST00000215587ENST00000585838ENST00000589737ENST00000591767ENST00000612655ENST00000614705ENST00000615234ENST00000619917ENSG00000167468ENST00000354171ENST00000587648ENST00000589115ENST00000593032ENST00000611653ENST00000622390ENSG00000180448ENST00000313093ENST00000543365ENST00000590577ENST00000591169CIL_0000QU_0002ENSMUSG00000004667ENSMUST00000004786ENSMUST00000143438ENSMUST00000152843ENSMUSG00000075706ENSMUST00000097227ENSMUST00000105372ENSMUST00000136081ENSMUST00000145703ENSMUST00000183037
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000099817 ENST00000215587 48.025±0.00 N/A 1.298±0.00 12.318±6.61 63.832±0.00 35.050±0.00 14.471±13.44 43.041±0.00 23.709±20.35 61.080±0.00 21.516±18.99 32.859±18.13 67.599±15.21 41.823±6.38
ENST00000585838 N/A N/A 2.931±0.00 N/A N/A N/A 26.215±0.00 43.582±0.00 36.608±0.00 N/A 52.571±0.00 5.772±0.00 N/A N/A
ENST00000586215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589737 N/A N/A N/A 2.852±0.00 N/A N/A N/A N/A N/A N/A N/A 44.939±7.18 70.570±4.09 N/A
ENST00000590060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591767 N/A N/A N/A N/A N/A N/A 2.342±0.00 N/A N/A N/A N/A 23.306±0.00 42.282±0.00 21.872±0.00
ENST00000592597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612655 N/A N/A N/A 3.361±0.00 N/A 2.126±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614705 N/A N/A N/A N/A N/A N/A N/A 17.977±0.00 N/A N/A N/A 27.315±23.56 N/A N/A
ENST00000615234 11.151±0.00 23.508±0.00 0.717±0.00 4.976±4.31 17.773±0.00 3.728±2.87 3.701±0.00 7.476±0.00 3.482±1.53 N/A N/A 7.984±0.00 N/A 6.785±1.10
ENST00000619917 58.223±0.00 N/A N/A 32.031±0.00 77.633±0.00 50.663±0.00 N/A 25.111±0.00 N/A N/A N/A N/A N/A 42.859±0.00
ENSG00000167468 ENST00000354171 N/A N/A N/A N/A N/A N/A 3.662±0.00 N/A N/A N/A N/A N/A N/A 145.321±110.10
ENST00000585362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585480 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587648 N/A N/A 9.247±0.00 N/A 8.959±0.00 5.933±0.00 N/A N/A 9.770±0.00 10.955±0.00 35.264±0.00 12.681±0.00 16.592±0.00 67.682±0.00
ENST00000587932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589115 N/A 29.052±0.00 N/A 120.015±0.00 305.096±0.00 2.982±0.00 N/A N/A N/A N/A N/A N/A N/A 177.135±0.00
ENST00000592940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000593032 N/A N/A N/A N/A N/A 4.978±0.00 4.929±0.00 N/A N/A 5.978±0.00 N/A 5.023±0.00 N/A N/A
ENST00000611653 725.606±0.00 167.515±0.00 16.450±0.00 153.684±39.73 487.422±464.36 147.065±132.12 87.015±72.33 195.961±74.04 117.265±88.77 210.163±197.88 267.516±199.35 164.241±152.28 220.672±118.71 295.833±105.23
ENST00000614791 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 104.229±0.00
ENSG00000180448 ENST00000313093 N/A 28.504±0.00 0.451±0.00 N/A 1.754±0.00 N/A N/A N/A 0.982±0.00 8.462±6.00 N/A N/A 11.658±0.18 N/A
ENST00000539243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543365 N/A N/A N/A N/A N/A N/A 0.424±0.00 N/A N/A N/A N/A N/A 8.173±0.00 N/A
ENST00000586033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590214 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590577 N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.377±0.00 N/A N/A N/A N/A
ENST00000591169 N/A 75.799±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004667 ENSMUST00000004786 74.301±6.94 44.822±2.24 66.328±16.18 52.639±27.14 53.979±18.30 67.738±8.87 73.516±11.69 92.988±3.27 58.354±35.62 86.455±3.70 22.887±0.92 124.915±47.21 83.526±35.90 39.076±14.84
ENSMUST00000131743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143438 N/A 3.674±0.31 N/A N/A 4.588±1.63 4.498±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147507 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152843 N/A N/A 12.076±0.00 17.457±5.48 N/A 15.864±1.34 N/A N/A N/A N/A N/A 25.545±11.69 17.535±0.00 N/A
ENSMUSG00000075706 ENSMUST00000097227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.104±0.00 N/A 344.108±197.75
ENSMUST00000105372 157.006±80.37 223.375±47.75 67.947±18.77 47.987±12.27 171.886±26.84 69.435±8.25 110.640±30.63 204.579±14.66 84.244±31.38 95.034±17.44 161.847±19.23 74.367±23.27 136.482±10.81 768.107±518.27
ENSMUST00000136081 N/A 921.616±174.38 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 554.738±46.62 N/A
ENSMUST00000144698 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145703 461.329±289.82 N/A N/A 79.634±0.00 361.743±215.73 N/A 211.910±52.56 272.342±88.23 155.969±0.00 89.868±11.64 N/A 161.288±71.03 N/A N/A
ENSMUST00000154095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183037 716.845±227.28 416.072±80.72 294.206±21.67 66.938±1.38 507.355±207.86 197.339±22.52 343.060±36.54 835.230±40.85 275.084±76.33 371.329±17.99 98.009±18.97 301.084±55.70 197.350±54.32 N/A

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