C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide E, 25kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000215587 POLR2E-012 ENSG00000099817 9606 - 19:1088163-1095374 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000215587
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000215587 48.025±0.00 1.298±0.00 12.318±6.61 63.832±0.00 35.050±0.00 14.471±13.44 43.041±0.00 23.709±20.35 61.080±0.00 21.516±18.99 32.859±18.13 67.599±15.21 41.823±6.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000HU CIL_0000HU_0001 CGP 19:1040101-1086628
CIL_00030S CIL_00030S_0001 CGP 19:1065923-1095380
CIL_0000QU CIL_0000QU_0001 CGP 19:1086579-1106791

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000004786 Polr2e-001 protein_coding Mus_musculus 0 723
ENSMUST00000152843 Polr2e-005 retained_intron Mus_musculus 0 643
ENSMUST00000131743 Polr2e-003 retained_intron Mus_musculus 0 643
ENSDART00000113964 POLR2E (2 of 2)-201 protein_coding Danio_rerio 0 449
ENSMUST00000143438 Polr2e-002 retained_intron Mus_musculus 0 287

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