C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomodulin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005769 Tmod4-001 ENSMUSG00000005628 10090 + 3:95124514-95129209 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000005769
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000005769 0.098±0.00 0.274±0.01 0.283±0.04 17.639±16.13 0.419±0.05 6.060±1.14 0.843±0.41 0.159±0.13 0.652±0.30 178.777±8.74 0.324±0.14 0.194±0.10 0.750±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064I CIL_00064I_0002 CGP 3:95111022-95129209
CIL_0003MO CIL_0003MO_0002 CGP 3:95124476-95134011

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005523 IDA tropomyosin binding
GO:0005865 IDA striated muscle thin filament
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000024294 tmod4-201 protein_coding Danio_rerio 0 241
ENSDART00000137153 tmod4-001 protein_coding Danio_rerio 0 241
ENST00000295314 TMOD4-001 protein_coding Homo_sapiens 0 1469
ENST00000441701 TMOD4-005 protein_coding Homo_sapiens 0 628
ENST00000463543 TMOD4-002 nonsense_mediated_decay Homo_sapiens 0 1387
ENST00000466891 TMOD4-004 protein_coding Homo_sapiens 0 255
ENST00000488488 TMOD4-006 processed_transcript Homo_sapiens 0 765
ENST00000491094 VPS72-003 retained_intron Homo_sapiens 0 1264

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