C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0003MO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000020890-ENSDARG00000003027 CGP 7955 16:31896712-31936226
GeneTranscriptPositionBiotype
ENSDARG00000003027 (scnm1)
sodium channel modifier 1
ENSDART00000004284 (scnm1-001) 31931895-31936210 protein_coding
ENSDART00000132351 (scnm1-002) 31931571-31936202 protein_coding
ENSDART00000133965 (scnm1-003) 31935722-31936226 processed_transcript
ENSDARG00000020890 (tmod4)
tropomodulin 4 (muscle)
ENSDART00000024294 (tmod4-201) 31909822-31930199 protein_coding
ENSDART00000137153 (tmod4-001) 31896712-31930207 protein_coding
CIL_0003MO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000005628-ENSMUSG00000092607 CGP 10090 3:95124476-95134011
GeneTranscriptPositionBiotype
ENSMUSG00000005628 (Tmod4)
tropomodulin 4
ENSMUST00000005769 (Tmod4-001) 95124514-95129209 protein_coding
ENSMUST00000107227 (Tmod4-005) 95124515-95129205 protein_coding
ENSMUST00000130545 (Tmod4-002) 95126204-95128744 retained_intron
ENSMUST00000131597 (Tmod4-006) 95124476-95127653 protein_coding
ENSMUST00000135867 (Tmod4-003) 95127170-95127866 protein_coding
ENSMUST00000149898 (Tmod4-004) 95127653-95129208 retained_intron
ENSMUSG00000092607 (Scnm1)
sodium channel modifier 1
ENSMUST00000172572 (Scnm1-001) 95129536-95134011 protein_coding
ENSMUST00000173462 (Scnm1-003) 95129729-95134011 protein_coding
ENSMUST00000173527 (Scnm1-005) 95130293-95133939 retained_intron
ENSMUST00000174508 (Scnm1-008) 95129719-95130684 retained_intron
ENSMUST00000174835 (Scnm1-007) 95129726-95131266 processed_transcript
ENSMUST00000174859 (Scnm1-004) 95129720-95133773 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003MO_0001ENSDARG00000003027ENSDART00000004284ENSDART00000132351ENSDART00000133965ENSDARG00000020890ENSDART00000024294ENSDART00000137153CIL_0003MO_0002ENSMUSG00000005628ENSMUST00000005769ENSMUST00000107227ENSMUST00000130545ENSMUST00000131597ENSMUST00000135867ENSMUST00000149898ENSMUSG00000092607ENSMUST00000172572ENSMUST00000173462ENSMUST00000173527ENSMUST00000174508ENSMUST00000174835ENSMUST00000174859
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003MO_0001ENSDARG00000003027ENSDART00000004284ENSDART00000132351ENSDARG00000020890ENSDART00000024294ENSDART00000137153CIL_0003MO_0002ENSMUSG00000005628ENSMUST00000005769ENSMUST00000107227ENSMUST00000130545ENSMUST00000131597ENSMUST00000135867ENSMUST00000149898ENSMUSG00000092607ENSMUST00000172572ENSMUST00000173462ENSMUST00000173527ENSMUST00000174508ENSMUST00000174835
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000003027 ENSDART00000004284 N/A N/A N/A 2.440±0.81 N/A N/A 1.518±0.97 3.394±2.17 0.253±0.00 N/A 0.380±0.00 N/A N/A N/A
ENSDART00000132351 N/A N/A N/A 1.441±0.78 N/A N/A 0.469±0.12 N/A 0.130±0.00 N/A N/A N/A N/A N/A
ENSDART00000133965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000020890 ENSDART00000024294 N/A N/A N/A 1.168±0.93 N/A N/A 2.855±0.92 5.116±4.90 0.228±0.00 N/A 349.980±0.00 N/A N/A N/A
ENSDART00000137153 N/A N/A N/A 0.522±0.00 N/A N/A 1.115±0.14 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005628 ENSMUST00000005769 0.098±0.00 N/A 0.274±0.01 0.283±0.04 17.639±16.13 0.419±0.05 6.060±1.14 0.843±0.41 0.159±0.13 0.652±0.30 178.777±8.74 0.324±0.14 0.194±0.10 0.750±0.00
ENSMUST00000107227 N/A N/A N/A N/A 9.371±0.70 N/A 2.404±0.66 0.367±0.00 0.136±0.00 0.614±0.00 74.372±5.37 0.390±0.00 N/A N/A
ENSMUST00000130545 0.385±0.00 0.108±0.00 N/A 0.138±0.06 11.465±6.73 0.188±0.00 1.443±0.00 0.079±0.00 N/A 0.669±0.31 N/A 0.443±0.26 0.113±0.01 N/A
ENSMUST00000131597 N/A N/A N/A N/A 8.505±8.23 N/A N/A 0.096±0.01 N/A 0.524±0.06 N/A 0.346±0.06 0.407±0.18 N/A
ENSMUST00000135867 N/A 0.419±0.00 N/A N/A N/A N/A N/A 0.429±0.00 N/A N/A N/A 1.762±0.00 N/A N/A
ENSMUST00000149898 N/A 0.382±0.15 N/A 0.308±0.10 N/A 0.563±0.27 N/A 0.556±0.09 0.162±0.07 0.479±0.00 N/A 0.494±0.24 0.342±0.26 1.064±0.27
ENSMUSG00000092607 ENSMUST00000172572 8.473±0.77 4.714±0.78 7.832±0.95 7.564±1.81 8.065±1.40 9.824±0.67 11.416±3.17 15.893±2.49 10.534±5.47 9.330±1.13 9.832±0.87 9.916±1.81 11.153±3.15 9.937±1.13
ENSMUST00000173462 5.539±0.42 N/A 10.432±1.87 8.229±2.07 N/A N/A 10.831±1.14 4.777±0.00 10.347±3.90 5.963±0.83 6.266±1.66 9.412±2.12 9.827±3.92 12.353±1.85
ENSMUST00000173527 3.973±0.39 2.372±0.00 6.419±0.00 6.603±1.72 4.109±0.63 3.639±0.71 4.148±0.85 N/A 3.573±0.98 3.951±0.84 N/A 6.104±1.85 7.809±0.03 2.803±0.00
ENSMUST00000174508 4.844±0.67 3.082±0.58 N/A 5.107±1.07 6.001±2.65 3.922±0.74 N/A 5.381±0.81 2.138±0.00 3.725±0.28 2.982±0.00 5.770±1.16 N/A N/A
ENSMUST00000174835 N/A 3.213±0.00 N/A 14.330±0.00 N/A N/A N/A N/A N/A N/A 7.796±0.00 16.227±2.28 14.033±0.40 6.712±0.00
ENSMUST00000174859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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