C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: parvalbumin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000005860 Pvalb-002 ENSMUSG00000005716 10090 - 15:78191114-78204237 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartKidneyTestisENSMUST00000005860
Transcript ID Adipose Brain Heart Kidney Testis
ENSMUST00000005860 0.020±0.00 2.196±1.70 0.356±0.00 6.483±2.71 0.085±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SS CIL_0005SS_0002 CGP 15:78159465-78206400
CIL_0006F3 CIL_0006F3_0003 CGP 15:78191114-78262580

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0030424 IDA axon
GO:0042803 IEA protein homodimerization activity
GO:0043025 IEA neuronal cell body
GO:0043234 IEA protein complex
GO:0046982 IEA protein heterodimerization activity
GO:0051480 IEA cytosolic calcium ion homeostasis
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216200 PVALB-001 protein_coding Homo_sapiens 0 593
ENST00000404171 PVALB-004 protein_coding Homo_sapiens 0 429
ENST00000406910 PVALB-005 protein_coding Homo_sapiens 0 363
ENST00000417718 PVALB-002 protein_coding Homo_sapiens 0 632
ENST00000443735 PVALB-006 protein_coding Homo_sapiens 0 388
ENST00000467935 PVALB-003 retained_intron Homo_sapiens 0 425
ENST00000620986 PVALB-201 protein_coding Homo_sapiens 0 592

Loading