C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GA repeat binding protein, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000009120 Gabpa-001 ENSMUSG00000008976 10090 + 16:84835124-84863779 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000009120
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000009120 9.058±2.08 12.366±1.57 8.845±2.58 6.807±3.80 9.350±0.94 8.173±0.98 10.788±0.49 10.432±1.03 9.007±2.25 10.755±1.41 5.958±0.60 10.920±1.36 6.820±2.03 5.515±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ML CIL_0000ML_0003 CGP 16:84774123-84835625
CIL_0000RF CIL_0000RF_0002 CGP 16:84827866-84863779
CIL_0000MM CIL_0000MM_0003 CGP 16:84834925-85173707

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001077 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001228 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001701 IMP in utero embryonic development
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0044212 ISO transcription regulatory region DNA binding
GO:0045653 IMP negative regulation of megakaryocyte differentiation
GO:0045944 ISO positive regulation of transcription from RNA polymerase II promoter
GO:0046982 ISO protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354828 GABPA-002 protein_coding Homo_sapiens 0 2248
ENST00000400075 GABPA-001 protein_coding Homo_sapiens 0 2418
ENST00000419271 RP11-340I6.6-001 processed_pseudogene Homo_sapiens 0 1696
ENST00000487266 GABPA-003 processed_transcript Homo_sapiens 0 604

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