C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GA binding protein transcription factor, alpha subunit 60kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354828 GABPA-002 ENSG00000154727 9606 + 21:25734570-25772460 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartOvaryTestisENST00000354828
Transcript ID Brain Breast Heart Ovary Testis
ENST00000354828 3.266±0.00 3.045±0.00 1.473±0.00 1.797±0.00 3.807±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ML CIL_0000ML_0002 CGP 21:25639272-25735673
CIL_0000RF CIL_0000RF_0001 CGP 21:25716503-25772460
CIL_0000MM CIL_0000MM_0002 CGP 21:25734570-26171128

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001701 IEA in utero embryonic development
GO:0003677 TAS DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0003713 TAS transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0030154 IBA cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045653 IEA negative regulation of megakaryocyte differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IDA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114184 Gabpa-002 protein_coding Mus_musculus 0 2350
ENSMUST00000009120 Gabpa-001 protein_coding Mus_musculus 0 2248
ENSMUST00000126031 Gabpa-004 processed_transcript Mus_musculus 0 558
ENSMUST00000148035 Gabpa-003 retained_intron Mus_musculus 0 470
ENSMUST00000127651 Atp5j-004 retained_intron Mus_musculus 0 279
ENSMUST00000140036 Atp5j-005 processed_transcript Mus_musculus 2.94273e-44 185

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