C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000MM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000069289-ENSDARG00000055543 CGP 7955 9:35985817-36041081
GeneTranscriptPositionBiotype
ENSDARG00000069289 (gabpa)
GA-binding protein transcription factor, alpha subunit 		ENSDART00000100700 (gabpa-002) 35986032-35996821 protein_coding
ENSDART00000100701 (gabpa-001) 35985817-35996821 protein_coding
ENSDART00000132631 (gabpa-004) 35989151-35993618 processed_transcript
ENSDART00000140110 (gabpa-003) 35987051-35989497 protein_coding
CIL_0000MM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000154727-ENSG00000142192 CGP 9606 21:25734570-26171128
GeneTranscriptPositionBiotype
ENSG00000142192 (APP)
amyloid beta (A4) precursor protein 		ENST00000346798 (APP-004) 25880550-26170654 protein_coding
ENST00000348990 (APP-003) 25880550-26170767 protein_coding
ENST00000354192 (APP-002) 25880550-26170747 protein_coding
ENST00000357903 (APP-001) 25880550-26170787 protein_coding
ENST00000358918 (APP-017) 25881610-26170667 protein_coding
ENST00000359726 (APP-201) 25880551-26171128 protein_coding
ENST00000415997 (APP-010) 25975190-26051032 protein_coding
ENST00000439274 (APP-015) 25881332-26170654 protein_coding
ENST00000440126 (APP-016) 25881331-26140460 protein_coding
ENST00000448850 (APP-005) 25945524-26090061 protein_coding
ENST00000462267 (APP-007) 26089511-26112083 retained_intron
ENST00000463070 (APP-008) 26021922-26053502 processed_transcript
ENST00000464867 (APP-012) 25881514-25897983 retained_intron
ENST00000466453 (APP-006) 26111985-26169429 processed_transcript
ENST00000474136 (APP-013) 26009596-26170746 processed_transcript
ENST00000491395 (APP-009) 25997188-26051018 processed_transcript
ENST00000548570 (APP-014) 26051160-26068338 processed_transcript
ENSG00000154723 (ATP5J)
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F6 		ENST00000284971 (ATP5J-001) 25724480-25734972 protein_coding
ENST00000400087 (ATP5J-006) 25724480-25735646 protein_coding
ENST00000400090 (ATP5J-005) 25724480-25735639 protein_coding
ENST00000400093 (ATP5J-002) 25724480-25735673 protein_coding
ENST00000400094 (ATP5J-007) 25724480-25734904 protein_coding
ENST00000400099 (ATP5J-004) 25716503-25735027 protein_coding
ENST00000457143 (ATP5J-003) 25724480-25735033 protein_coding
ENST00000486002 (ATP5J-008) 25724698-25734904 retained_intron
ENSG00000154727 (GABPA)
GA binding protein transcription factor, alpha subunit 60kDa 		ENST00000354828 (GABPA-002) 25734570-25772460 protein_coding
ENST00000400075 (GABPA-001) 25735384-25772460 protein_coding
ENST00000487266 (GABPA-003) 25735389-25752348 processed_transcript
ENSG00000224541 (AP001439.2)
 ENST00000455275 (AP001439.2-001) 26158091-26175824 antisense
ENSG00000233783 (AP001442.2)
 ENST00000456904 (AP001442.2-001) 25933816-25935270 antisense
ENST00000596385 (AP001442.2-002) 25934087-25941641 antisense
ENST00000596669 (AP001442.2-005) 25934341-25935178 retained_intron
ENST00000597894 (AP001442.2-003) 25934306-25941803 antisense
ENST00000599572 (AP001442.2-006) 25934089-25935178 antisense
ENST00000600590 (AP001442.2-004) 25934312-25942686 antisense
ENST00000617755 (AP001442.2-007) 25928754-25935126 antisense
ENSG00000235514 (LLPHP2)
LLP homolog, long-term synaptic facilitation (Aplysia) pseudogene 2 		ENST00000436405 (LLPHP2-001) 25762938-25763333 processed_pseudogene
ENSG00000251972 (RNU6-123P)
RNA, U6 small nuclear 123, pseudogene 		ENST00000516163 (RNU6-123P-201) 25943044-25943145 snRNA
CIL_0000MM_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000008976-ENSMUSG00000022892 CGP 10090 16:84834925-85173707
GeneTranscriptPositionBiotype
ENSMUSG00000008976 (Gabpa)
GA repeat binding protein, alpha 		ENSMUST00000009120 (Gabpa-001) 84835124-84863779 protein_coding
ENSMUST00000114184 (Gabpa-002) 84834925-84861315 protein_coding
ENSMUST00000126031 (Gabpa-004) 84852583-84860429 processed_transcript
ENSMUST00000139101 (Gabpa-005) 84860045-84862465 processed_transcript
ENSMUST00000148035 (Gabpa-003) 84856040-84857578 retained_intron
ENSMUSG00000022890 (Atp5j)
ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F 		ENSMUST00000023608 (Atp5j-001) 84827871-84835625 protein_coding
ENSMUST00000114191 (Atp5j-002) 84827871-84835503 protein_coding
ENSMUST00000114193 (Atp5j-009) 84827866-84834239 protein_coding
ENSMUST00000127651 (Atp5j-004) 84831071-84835298 retained_intron
ENSMUST00000138279 (Atp5j-011) 84828439-84835602 protein_coding
ENSMUST00000140036 (Atp5j-005) 84831329-84835155 processed_transcript
ENSMUST00000144799 (Atp5j-007) 84827871-84828813 retained_intron
ENSMUST00000146103 (Atp5j-012) 84827874-84831607 retained_intron
ENSMUST00000146225 (Atp5j-006) 84829548-84833876 processed_transcript
ENSMUST00000148787 (Atp5j-003) 84834276-84835529 retained_intron
ENSMUST00000150502 (Atp5j-010) 84833523-84834832 retained_intron
ENSMUST00000155956 (Atp5j-008) 84831369-84835005 processed_transcript
ENSMUSG00000022892 (App)
amyloid beta (A4) precursor protein 		ENSMUST00000005406 (App-201) 84954440-85173707 protein_coding
ENSMUSG00000098604 (Gm27295)
predicted gene, 27295 		ENSMUST00000184264 (Gm27295-201) 85168849-85169001 snoRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MM_0001ENSDARG00000069289ENSDART00000100700ENSDART00000100701ENSDART00000132631ENSDART00000140110CIL_0000MM_0002ENSG00000142192ENST00000346798ENST00000348990ENST00000354192ENST00000357903ENST00000358918ENST00000359726ENST00000415997ENST00000439274ENST00000440126ENST00000448850ENST00000462267ENST00000463070ENST00000464867ENST00000466453ENST00000474136ENST00000491395ENST00000548570ENSG00000154723ENST00000284971ENST00000400087ENST00000400090ENST00000400093ENST00000400094ENST00000400099ENST00000457143ENST00000486002ENSG00000154727ENST00000354828ENST00000400075ENST00000487266ENSG00000224541ENST00000455275ENSG00000233783ENST00000456904ENST00000596385ENST00000596669ENST00000597894ENST00000599572ENST00000600590ENST00000617755ENSG00000235514ENST00000436405ENSG00000251972ENST00000516163CIL_0000MM_0003ENSMUSG00000008976ENSMUST00000009120ENSMUST00000114184ENSMUST00000126031ENSMUST00000139101ENSMUST00000148035ENSMUSG00000022890ENSMUST00000023608ENSMUST00000114191ENSMUST00000114193ENSMUST00000127651ENSMUST00000138279ENSMUST00000140036ENSMUST00000144799ENSMUST00000146103ENSMUST00000146225ENSMUST00000148787ENSMUST00000150502ENSMUST00000155956ENSMUSG00000022892ENSMUST00000005406ENSMUSG00000098604ENSMUST00000184264
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000MM_0001ENSDARG00000069289ENSDART00000100700ENSDART00000100701ENSDART00000140110CIL_0000MM_0002ENSG00000142192ENST00000346798ENST00000348990ENST00000354192ENST00000357903ENST00000358918ENST00000439274ENST00000463070ENSG00000154723ENST00000284971ENST00000400090ENST00000457143ENSG00000154727ENST00000354828ENST00000400075ENSG00000224541ENST00000455275ENSG00000233783ENST00000456904ENST00000596385ENST00000596669ENST00000597894ENST00000600590ENST00000617755ENSG00000235514ENST00000436405ENSG00000251972ENST00000516163CIL_0000MM_0003ENSMUSG00000008976ENSMUST00000009120ENSMUST00000114184ENSMUSG00000022890ENSMUST00000023608ENSMUST00000114191ENSMUST00000138279ENSMUST00000146103ENSMUSG00000022892ENSMUST00000005406ENSMUSG00000098604ENSMUST00000184264
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000069289 ENSDART00000100700 N/A N/A N/A 0.783±0.04 N/A N/A N/A 1.211±0.00 0.340±0.00 N/A N/A N/A N/A N/A
ENSDART00000100701 N/A N/A N/A 5.734±0.59 N/A N/A 5.889±0.04 3.023±0.00 1.210±0.00 N/A 2.480±0.00 N/A N/A N/A
ENSDART00000132631 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000140110 N/A N/A N/A 0.871±0.00 N/A N/A 1.777±0.49 1.154±0.01 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000142192 ENST00000346798 N/A N/A N/A N/A N/A 41.159±0.00 39.393±0.00 N/A 18.876±0.00 32.103±25.15 5.312±1.96 45.990±25.47 92.975±10.52 N/A
ENST00000348990 N/A N/A N/A 70.558±43.20 N/A N/A 2.284±0.00 N/A N/A N/A 4.274±0.00 N/A N/A N/A
ENST00000354192 N/A N/A N/A N/A N/A N/A N/A N/A 14.611±0.00 27.503±0.00 N/A N/A N/A 26.697±0.00
ENST00000357903 110.831±0.00 94.457±0.00 33.742±0.00 109.033±64.00 35.087±8.45 88.740±58.23 23.996±17.42 125.331±103.39 21.623±2.90 53.558±38.42 11.646±0.00 55.554±20.36 93.404±31.89 77.572±29.90
ENST00000358918 N/A N/A N/A N/A 11.535±0.00 N/A 5.581±0.00 N/A 20.180±0.00 35.083±26.92 1.819±0.00 11.081±0.00 N/A N/A
ENST00000359726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439274 89.423±0.00 79.155±0.00 30.189±0.00 217.694±0.00 27.081±6.18 54.866±40.87 46.747±0.00 84.949±69.63 20.100±0.00 84.131±0.00 13.412±0.00 65.100±32.27 112.935±58.10 56.504±0.17
ENST00000440126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000448850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463070 N/A N/A N/A 194.274±0.00 N/A N/A 25.474±0.00 55.705±0.00 91.883±0.00 45.779±0.00 N/A N/A N/A N/A
ENST00000464867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000154723 ENST00000284971 82.671±0.00 80.218±0.00 14.034±0.00 72.619±45.80 75.849±59.41 106.260±89.76 240.446±194.60 101.945±80.14 77.608±50.28 43.097±25.87 74.074±10.54 81.215±40.94 112.463±10.51 117.028±0.00
ENST00000400087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000400090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.594±0.00 N/A N/A
ENST00000400093 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000400094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000400099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457143 N/A N/A N/A 23.858±0.00 N/A N/A N/A 40.733±0.00 N/A N/A 23.838±0.00 N/A N/A N/A
ENST00000486002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000154727 ENST00000354828 N/A N/A N/A 3.266±0.00 3.045±0.00 N/A 1.473±0.00 N/A N/A N/A N/A 1.797±0.00 N/A 3.807±0.06
ENST00000400075 5.530±0.00 4.530±0.00 N/A 2.348±0.00 2.808±0.54 2.723±0.00 N/A 5.487±0.00 3.861±1.13 5.966±2.14 2.436±1.02 4.481±0.70 5.997±0.00 6.685±0.27
ENST00000487266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224541 ENST00000455275 N/A N/A N/A 0.337±0.00 N/A N/A 0.322±0.00 N/A N/A N/A N/A N/A N/A 0.177±0.03
ENSG00000233783 ENST00000456904 N/A N/A N/A 0.257±0.00 N/A 1.132±0.00 0.154±0.00 N/A 1.193±0.00 N/A N/A 0.542±0.51 0.029±0.00 N/A
ENST00000596385 N/A N/A N/A N/A N/A N/A N/A N/A 0.181±0.00 N/A N/A N/A N/A 0.246±0.00
ENST00000596669 N/A 0.662±0.00 2.027±0.00 0.627±0.00 N/A 0.667±0.45 0.231±0.00 N/A 0.104±0.00 0.897±0.00 N/A 0.151±0.00 0.058±0.00 0.249±0.00
ENST00000597894 N/A N/A N/A 0.253±0.00 0.277±0.00 1.642±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599572 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000600590 N/A N/A N/A N/A N/A N/A 0.063±0.00 0.200±0.00 N/A N/A 0.447±0.00 0.042±0.02 N/A 0.114±0.00
ENST00000617755 1.593±0.00 3.828±0.00 N/A 1.104±0.00 1.510±0.00 1.099±0.00 0.926±0.00 1.658±1.22 0.789±0.00 3.100±0.00 0.780±0.17 0.248±0.16 0.158±0.00 1.995±0.00
ENSG00000235514 ENST00000436405 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.133±0.00 N/A 0.212±0.00 N/A 0.099±0.00
ENSG00000251972 ENST00000516163 N/A 0.199±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.500±0.00 N/A 1.456±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008976 ENSMUST00000009120 9.058±2.08 12.366±1.57 8.845±2.58 6.807±3.80 9.350±0.94 8.173±0.98 10.788±0.49 10.432±1.03 9.007±2.25 10.755±1.41 5.958±0.60 10.920±1.36 6.820±2.03 5.515±0.00
ENSMUST00000114184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.425±0.00 16.772±7.21 16.036±0.00
ENSMUST00000126031 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000022890 ENSMUST00000023608 94.711±3.89 125.813±37.36 108.489±15.69 132.794±43.25 98.476±21.75 62.192±6.73 415.452±36.65 194.030±38.71 123.826±40.49 71.139±10.40 401.291±73.84 115.063±40.41 116.352±40.24 137.936±10.70
ENSMUST00000114191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 68.906±0.00 N/A 46.870±2.56
ENSMUST00000114193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138279 N/A N/A N/A 211.016±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 221.791±87.54 N/A
ENSMUST00000140036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 232.198±12.66 134.716±20.44 N/A
ENSMUST00000146225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148787 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150502 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155956 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000022892 ENSMUST00000005406 64.615±9.94 30.948±5.44 44.431±0.42 236.257±114.06 47.578±8.94 68.194±31.11 12.799±5.19 168.121±31.37 5.136±2.18 135.970±45.89 6.732±1.36 57.435±46.07 39.715±22.18 14.322±5.87
ENSMUSG00000098604 ENSMUST00000184264 N/A N/A N/A 1.912±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.829±0.00 N/A

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