C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GA binding protein transcription factor, alpha subunit 60kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000400075 GABPA-001 ENSG00000154727 9606 + 21:25735384-25772460 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000400075
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000400075 5.530±0.00 4.530±0.00 2.348±0.00 2.808±0.54 2.723±0.00 5.487±0.00 3.861±1.13 5.966±2.14 2.436±1.02 4.481±0.70 5.997±0.00 6.685±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000ML CIL_0000ML_0002 CGP 21:25639272-25735673
CIL_0000RF CIL_0000RF_0001 CGP 21:25716503-25772460
CIL_0000MM CIL_0000MM_0002 CGP 21:25734570-26171128

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 TAS DNA binding
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0003713 TAS transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0030154 IBA cell differentiation
GO:0043565 IEA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IDA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000009120 Gabpa-001 protein_coding Mus_musculus 0 2418
ENSMUST00000114184 Gabpa-002 protein_coding Mus_musculus 0 2209
ENSMUST00000126031 Gabpa-004 processed_transcript Mus_musculus 0 558
ENSMUST00000148035 Gabpa-003 retained_intron Mus_musculus 0 470

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