C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 5A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000010254 Stx5a-004 ENSMUSG00000010110 10090 + 19:8741489-8755642 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverLungMuscleOvaryPlacentaENSMUST00000010254
Transcript ID Adrenal Brain Breast Colon Liver Lung Muscle Ovary Placenta
ENSMUST00000010254 9.590±1.02 3.242±0.00 8.419±0.00 9.319±1.41 6.369±1.10 9.336±1.16 2.245±0.44 16.345±5.02 14.349±8.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089X CIL_00089X_0002 VISTA 19:8644197-9245760

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0016192 TAS vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294179 STX5-001 protein_coding Homo_sapiens 0 1153
ENST00000377897 STX5-002 protein_coding Homo_sapiens 0 1690
ENST00000394690 STX5-005 protein_coding Homo_sapiens 0 952
ENST00000431400 STX5-007 protein_coding Homo_sapiens 0 556
ENST00000486437 STX5-006 nonsense_mediated_decay Homo_sapiens 0 329
ENST00000488303 STX5-008 nonsense_mediated_decay Homo_sapiens 0 326
ENST00000491231 STX5-004 nonsense_mediated_decay Homo_sapiens 0 1107
ENST00000492066 STX5-003 nonsense_mediated_decay Homo_sapiens 0 776

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