C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000013995 Abca4-001 ENSMUSG00000028125 10090 + 3:122044443-122180061 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000013995
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000013995 0.225±0.00 0.293±0.13 0.080±0.04 0.044±0.00 0.058±0.01 0.881±0.43 0.017±0.01 0.042±0.01 1.312±0.44 0.230±0.16 0.083±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DI CIL_0009DI_0002 VISTA 3:121653542-122254391
CIL_0009DJ CIL_0009DJ_0002 VISTA 3:121747471-122349247
CIL_0005PB CIL_0005PB_0003 CGP 3:121953229-122180061
CIL_0009DH CIL_0009DH_0002 VISTA 3:121992915-122594267

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004012 IMP phospholipid-translocating ATPase activity
GO:0005524 IEA ATP binding
GO:0005548 IMP phospholipid transporter activity
GO:0005887 TAS integral component of plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0006649 IMP phospholipid transfer to membrane
GO:0007601 IMP visual perception
GO:0042626 TAS ATPase activity, coupled to transmembrane movement of substances
GO:0045332 IMP phospholipid translocation
GO:0045494 IMP photoreceptor cell maintenance
GO:0050896 IEA response to stimulus
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370225 ABCA4-001 protein_coding Homo_sapiens 0 7529
ENST00000460514 ABCA4-004 processed_transcript Homo_sapiens 0 797
ENST00000465352 ABCA4-002 processed_transcript Homo_sapiens 0 743
ENST00000470771 ABCA4-005 processed_transcript Homo_sapiens 0 370
ENST00000472033 ABCA4-003 processed_transcript Homo_sapiens 0 283
ENST00000484388 ABCA4-006 processed_transcript Homo_sapiens 0 318
ENST00000536513 ABCA4-201 protein_coding Homo_sapiens 0 3502

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