C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000469475 PSMD11-003 ENSG00000108671 9606 + 17:32480078-32480962 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungMuscleOvaryPlacentaTestisENST00000469475
Transcript ID Lung Muscle Ovary Placenta Testis
ENST00000469475 9.202±0.00 8.611±0.00 65.859±0.00 44.308±0.00 36.409±15.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000VN CIL_0000VN_0001 CGP 17:32350117-32483318
CIL_0005RM CIL_0005RM_0003 CGP 17:32444261-32491256

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147898 Psmd11-002 retained_intron Mus_musculus 0 571
ENSMUST00000017572 Psmd11-001 protein_coding Mus_musculus 0 571
ENSMUST00000148895 Psmd11-008 protein_coding Mus_musculus 0 540
ENSMUST00000125591 Psmd11-007 nonsense_mediated_decay Mus_musculus 0 315
ENSMUST00000173797 Psmd11-006 protein_coding Mus_musculus 0 315
ENSMUST00000129500 Psmd11-005 protein_coding Mus_musculus 0 315
ENSMUST00000173938 Psmd11-004 protein_coding Mus_musculus 0 315
ENSMUST00000121864 Gm14048-001 processed_pseudogene Mus_musculus 0 292
ENSMUST00000172847 Psmd11-013 nonsense_mediated_decay Mus_musculus 0 235
ENSDART00000154696 psmd11a-201 protein_coding Danio_rerio 6.00036e-42 174
ENSDART00000151449 psmd11a-003 retained_intron Danio_rerio 1.99993e-41 172
ENSDART00000084448 psmd11a-001 protein_coding Danio_rerio 1.99993e-41 172

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