C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycine receptor, alpha 4 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018739 Glra4-001 ENSMUSG00000018595 10090 - X:136757674-136780141 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryPlacentaTestisENSMUST00000018739
Transcript ID Brain Liver Ovary Placenta Testis
ENSMUST00000018739 0.060±0.05 0.013±0.01 0.055±0.05 0.031±0.03 0.036±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004U4 CIL_0004U4_0002 CGP X:136732942-136780141

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0005887 IEA integral component of plasma membrane
GO:0016594 IEA glycine binding
GO:0022824 IEA transmitter-gated ion channel activity
GO:0030054 IEA cell junction
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000009777 GLRA3-201 protein_coding Danio_rerio 0 407
ENSDART00000108535 GABRB1-201 protein_coding Danio_rerio 0.000000004 68
ENSDART00000087300 gabrb3-001 protein_coding Danio_rerio 0.000000004 68
ENST00000372617 GLRA4-001 protein_coding Homo_sapiens 0 2019
ENST00000436213 GLRA4-003 nonsense_mediated_decay Homo_sapiens 0 564
ENST00000480725 GLRA4-004 retained_intron Homo_sapiens 0 1509

Loading