C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: gamma-aminobutyric acid (GABA) A receptor, beta 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000087300 gabrb3-001 ENSDARG00000023771 7955 + 6:38312821-38444389 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyENSDART00000087300
Transcript ID Brain Heart Kidney
ENSDART00000087300 5.738±1.98 0.485±0.40 0.079±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006LH CIL_0006LH_0001 CGP 6:38297800-38444389
CIL_0007CV CIL_0007CV_0001 CGP 6:38312821-38657266

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0006810 IEA transport
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0016021 IEA integral to membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018739 Glra4-001 protein_coding Mus_musculus 0.000000004 68
ENSMUST00000039697 Gabrb3-001 protein_coding Mus_musculus 0.0000000000001 84
ENSMUST00000085240 Gabrb3-002 protein_coding Mus_musculus 0.0000000000001 84
ENSMUST00000154833 Glra4-002 retained_intron Mus_musculus 0.000000004 68
ENST00000372617 GLRA4-001 protein_coding Homo_sapiens 0.000000000002 79
ENST00000480725 GLRA4-004 retained_intron Homo_sapiens 0.000000000002 79

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