C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histidyl-tRNA synthetase 2, mitochondrial (putative)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019287 Hars2-002 ENSMUSG00000019143 10090 + 18:36783231-36791694 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000019287
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000019287 4.289±0.65 6.025±0.00 5.194±0.00 5.794±0.00 4.213±1.42 3.062±0.41 3.033±0.47 4.423±0.91 2.979±0.30 4.408±0.62 2.679±0.32 5.346±1.33 1.967±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ZJ CIL_0006ZJ_0002 CGP 18:36763671-36783205
CIL_0006ZR CIL_0006ZR_0002 CGP 18:36766530-36792562
CIL_0006ZQ CIL_0006ZQ_0002 CGP 18:36783008-36799660

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0005739 IDA mitochondrion
GO:0008152 IEA metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230771 HARS2-001 protein_coding Homo_sapiens 0 972
ENST00000448069 HARS2-004 protein_coding Homo_sapiens 0 486
ENST00000508522 HARS2-003 protein_coding Homo_sapiens 0 845
ENST00000510104 HARS2-002 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000513688 HARS2-011 retained_intron Homo_sapiens 0 647

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