C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020377 Tcf3-004 ENSMUSG00000020167 10090 - 10:80409608-80433621 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonLiverMuscleOvaryPlacentaTestisENSMUST00000020377
Transcript ID Adipose Breast Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000020377 11.319±0.00 9.771±0.00 5.277±0.00 1.090±0.00 1.396±0.26 12.122±0.00 3.198±0.00 1.303±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004BR CIL_0004BR_0002 CGP 10:80402997-80433647
CIL_000188 CIL_000188_0002 CGP 10:80409514-80517276

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000788 IDA nuclear nucleosome
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IMP RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001205 IMP RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001779 IGI natural killer cell differentiation
GO:0002326 ISS B cell lineage commitment
GO:0003677 ISS DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0003713 ISS transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IDA transcription factor complex
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0007369 IGI gastrulation
GO:0008134 ISS transcription factor binding
GO:0010628 IMP positive regulation of gene expression
GO:0030098 IMP lymphocyte differentiation
GO:0030890 ISS positive regulation of B cell proliferation
GO:0032496 IMP response to lipopolysaccharide
GO:0033077 IMP T cell differentiation in thymus
GO:0033152 IMP immunoglobulin V(D)J recombination
GO:0042493 IMP response to drug
GO:0042803 ISS protein homodimerization activity
GO:0043234 ISS protein complex
GO:0043565 IGI sequence-specific DNA binding
GO:0043966 IMP histone H3 acetylation
GO:0043967 IMP histone H4 acetylation
GO:0045666 IDA positive regulation of neuron differentiation
GO:0045787 ISS positive regulation of cell cycle
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IPI protein heterodimerization activity
GO:0048468 IGI cell development
GO:0048541 IGI Peyer's patch development
GO:0050821 IDA protein stabilization
GO:0051091 ISS positive regulation of sequence-specific DNA binding transcription factor activity
GO:0070888 IDA E-box binding
GO:2000045 ISS regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262965 TCF3-201 protein_coding Homo_sapiens 0 1592
ENST00000344749 TCF3-202 protein_coding Homo_sapiens 0 1094
ENST00000395423 TCF3-003 protein_coding Homo_sapiens 0 878
ENST00000453954 TCF3-008 protein_coding Homo_sapiens 0 1085
ENST00000585855 TCF3-015 nonsense_mediated_decay Homo_sapiens 0 427
ENST00000586164 TCF3-011 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000586318 TCF3-007 protein_coding Homo_sapiens 0 267
ENST00000587235 TCF3-017 protein_coding Homo_sapiens 0 544
ENST00000587425 TCF3-013 protein_coding Homo_sapiens 0 523
ENST00000588136 TCF3-002 protein_coding Homo_sapiens 0 1358
ENST00000590436 TCF3-009 protein_coding Homo_sapiens 4.99997e-41 172
ENST00000590605 TCF3-018 retained_intron Homo_sapiens 0 388
ENST00000592395 TCF3-012 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000592628 TCF3-006 protein_coding Homo_sapiens 0 551
ENST00000593064 TCF3-014 protein_coding Homo_sapiens 0 580
ENST00000610756 TCF3-010 retained_intron Homo_sapiens 0 1048
ENST00000611869 TCF3-001 protein_coding Homo_sapiens 0 1592

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