C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588136 TCF3-002 ENSG00000071564 9606 - 19:1611168-1650745 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastOvaryENST00000588136
Transcript ID Bladder Breast Ovary
ENST00000588136 0.463±0.00 0.937±0.00 0.418±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004BR CIL_0004BR_0001 CGP 19:1597172-1652605
CIL_000188 CIL_000188_0001 CGP 19:1609290-1780988

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0002326 NAS B cell lineage commitment
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003713 IDA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IDA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IDA transcription, DNA-templated
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0008134 IPI transcription factor binding
GO:0030183 NAS B cell differentiation
GO:0030890 IMP positive regulation of B cell proliferation
GO:0031435 IPI mitogen-activated protein kinase kinase kinase binding
GO:0033152 IDA immunoglobulin V(D)J recombination
GO:0035326 IC enhancer binding
GO:0042692 TAS muscle cell differentiation
GO:0042803 IDA protein homodimerization activity
GO:0043234 IDA protein complex
GO:0043425 IPI bHLH transcription factor binding
GO:0043565 IDA sequence-specific DNA binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045666 ISS positive regulation of neuron differentiation
GO:0045787 IDA positive regulation of cell cycle
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IPI protein heterodimerization activity
GO:0046983 IEA protein dimerization activity
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051149 TAS positive regulation of muscle cell differentiation
GO:0070491 IPI repressing transcription factor binding
GO:0070644 IDA vitamin D response element binding
GO:0070888 IDA E-box binding
GO:2000045 IDA regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000020379 Tcf3-011 protein_coding Mus_musculus 0 1642
ENSMUST00000105344 Tcf3-005 protein_coding Mus_musculus 0 1635
ENSMUST00000105340 Tcf3-003 protein_coding Mus_musculus 0 1624
ENSMUST00000105345 Tcf3-002 protein_coding Mus_musculus 0 1624
ENSMUST00000105343 Tcf3-007 protein_coding Mus_musculus 0 1615
ENSMUST00000105341 Tcf3-009 protein_coding Mus_musculus 0 1609
ENSMUST00000156990 Tcf3-010 protein_coding Mus_musculus 0 1580
ENSMUST00000105342 Tcf3-006 protein_coding Mus_musculus 0 1376
ENSMUST00000105346 Tcf3-001 protein_coding Mus_musculus 0 1365
ENSMUST00000020377 Tcf3-004 protein_coding Mus_musculus 0 1358
ENSMUST00000105339 Tcf3-008 protein_coding Mus_musculus 0 1352
ENSMUST00000129027 Tcf3-012 processed_transcript Mus_musculus 0 309
ENSMUST00000127931 Tcf3-013 retained_intron Mus_musculus 0 195
ENSDART00000078298 tcf3a-202 protein_coding Danio_rerio 5.60519e-45 187

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