C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004BR_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000127540-ENSG00000071564 CGP 9606 19:1597172-1652605
GeneTranscriptPositionBiotype
ENSG00000071564 (TCF3)
transcription factor 3 		ENST00000262965 (TCF3-201) 1609290-1652329 protein_coding
ENST00000344749 (TCF3-202) 1609290-1652329 protein_coding
ENST00000395423 (TCF3-003) 1611249-1652604 protein_coding
ENST00000453954 (TCF3-008) 1609293-1652591 protein_coding
ENST00000585731 (TCF3-005) 1610965-1615798 protein_coding
ENST00000585855 (TCF3-015) 1611314-1619150 nonsense_mediated_decay
ENST00000586164 (TCF3-011) 1611755-1615798 nonsense_mediated_decay
ENST00000586318 (TCF3-007) 1632051-1651356 protein_coding
ENST00000586410 (TCF3-016) 1615811-1621046 protein_coding
ENST00000587235 (TCF3-017) 1622324-1652605 protein_coding
ENST00000587425 (TCF3-013) 1609472-1615804 protein_coding
ENST00000588136 (TCF3-002) 1611168-1650745 protein_coding
ENST00000590436 (TCF3-009) 1611168-1619853 protein_coding
ENST00000590605 (TCF3-018) 1615791-1621206 retained_intron
ENST00000590684 (TCF3-004) 1611056-1619347 protein_coding
ENST00000592395 (TCF3-012) 1609291-1615798 nonsense_mediated_decay
ENST00000592628 (TCF3-006) 1609293-1619135 protein_coding
ENST00000593064 (TCF3-014) 1609293-1619209 protein_coding
ENST00000610756 (TCF3-010) 1611687-1622236 retained_intron
ENST00000611869 (TCF3-001) 1609293-1650278 protein_coding
ENSG00000252933 (RNU6-1223P)
RNA, U6 small nuclear 1223, pseudogene 		ENST00000517124 (RNU6-1223P-201) 1616492-1616595 snRNA
ENSG00000267059 (UQCR11)
ubiquinol-cytochrome c reductase, complex III subunit XI 		ENST00000585937 (UQCR11-001) 1578339-1605445 nonsense_mediated_decay

Homo sapiens Ensembl (GRCh38)

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CIL_0004BR_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000020163-ENSMUSG00000020167 CGP 10090 10:80402997-80433647
GeneTranscriptPositionBiotype
ENSMUSG00000020163 (Uqcr11)
ubiquinol-cytochrome c reductase, complex III subunit XI 		ENSMUST00000020372 (Uqcr11-001) 80402997-80406830 protein_coding
ENSMUST00000138428 (Uqcr11-003) 80402997-80406766 processed_transcript
ENSMUST00000141683 (Uqcr11-002) 80402998-80406795 processed_transcript
ENSMUSG00000020167 (Tcf3)
transcription factor 3 		ENSMUST00000020377 (Tcf3-004) 80409608-80433621 protein_coding
ENSMUST00000020379 (Tcf3-011) 80409626-80433635 protein_coding
ENSMUST00000105339 (Tcf3-008) 80410054-80431082 protein_coding
ENSMUST00000105340 (Tcf3-003) 80409626-80433635 protein_coding
ENSMUST00000105341 (Tcf3-009) 80409620-80431012 protein_coding
ENSMUST00000105342 (Tcf3-006) 80409547-80433643 protein_coding
ENSMUST00000105343 (Tcf3-007) 80409547-80433647 protein_coding
ENSMUST00000105344 (Tcf3-005) 80409514-80433637 protein_coding
ENSMUST00000105345 (Tcf3-002) 80409514-80433647 protein_coding
ENSMUST00000105346 (Tcf3-001) 80409608-80433621 protein_coding
ENSMUST00000127931 (Tcf3-013) 80415243-80416288 retained_intron
ENSMUST00000129027 (Tcf3-012) 80412627-80415487 processed_transcript
ENSMUST00000156244 (Tcf3-014) 80420083-80421860 protein_coding
ENSMUST00000156990 (Tcf3-010) 80410054-80430985 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004BR_0001ENSG00000071564ENST00000262965ENST00000344749ENST00000395423ENST00000453954ENST00000585731ENST00000585855ENST00000586164ENST00000586318ENST00000586410ENST00000587235ENST00000587425ENST00000588136ENST00000590436ENST00000590605ENST00000590684ENST00000592395ENST00000592628ENST00000593064ENST00000610756ENST00000611869ENSG00000252933ENST00000517124ENSG00000267059ENST00000585937CIL_0004BR_0002ENSMUSG00000020163ENSMUST00000020372ENSMUST00000138428ENSMUST00000141683ENSMUSG00000020167ENSMUST00000020377ENSMUST00000020379ENSMUST00000105339ENSMUST00000105340ENSMUST00000105341ENSMUST00000105342ENSMUST00000105343ENSMUST00000105344ENSMUST00000105345ENSMUST00000105346ENSMUST00000127931ENSMUST00000129027ENSMUST00000156244ENSMUST00000156990
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004BR_0001ENSG00000071564ENST00000262965ENST00000344749ENST00000395423ENST00000453954ENST00000585731ENST00000586410ENST00000587235ENST00000587425ENST00000588136ENST00000590436ENST00000590684ENST00000592395ENST00000592628ENST00000593064ENST00000610756ENST00000611869ENSG00000252933ENST00000517124ENSG00000267059ENST00000585937CIL_0004BR_0002ENSMUSG00000020163ENSMUST00000020372ENSMUSG00000020167ENSMUST00000020377ENSMUST00000020379ENSMUST00000105339ENSMUST00000105340ENSMUST00000105341ENSMUST00000105342ENSMUST00000105343ENSMUST00000105344ENSMUST00000105345ENSMUST00000105346ENSMUST00000156990
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000071564 ENST00000262965 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.658±0.00 N/A N/A 2.725±0.00 N/A
ENST00000344749 3.938±0.00 4.367±0.00 N/A 1.772±0.00 8.510±0.00 4.395±0.00 0.508±0.00 N/A 0.783±0.00 5.128±0.00 N/A 8.790±8.46 4.077±0.69 19.273±0.00
ENST00000395423 N/A N/A N/A N/A N/A 0.568±0.00 N/A N/A N/A N/A N/A 13.371±0.00 5.129±0.00 34.128±0.00
ENST00000453954 N/A 6.955±0.00 N/A N/A N/A N/A N/A 1.427±0.96 0.997±0.00 0.296±0.00 N/A 13.073±5.23 N/A N/A
ENST00000585731 4.806±0.00 N/A N/A N/A N/A N/A 0.308±0.00 N/A 1.558±0.00 7.059±0.00 N/A N/A N/A N/A
ENST00000585855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586164 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586318 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.532±0.00 N/A N/A
ENST00000587235 N/A N/A 2.073±0.00 N/A 4.988±0.00 N/A 2.061±0.00 N/A 2.295±0.00 1.491±0.00 N/A 2.244±0.00 N/A N/A
ENST00000587425 N/A N/A N/A 7.037±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000588136 N/A N/A 0.463±0.00 N/A 0.937±0.00 N/A N/A N/A N/A N/A N/A 0.418±0.00 N/A N/A
ENST00000590436 N/A N/A N/A N/A N/A 10.262±0.00 N/A 7.033±0.00 2.551±0.00 N/A N/A 32.353±0.00 16.998±0.00 55.496±5.94
ENST00000590605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590684 N/A N/A 1.084±0.00 0.785±0.00 0.975±0.00 1.099±0.00 1.017±0.75 0.865±0.00 N/A N/A 4.297±3.49 N/A 6.300±0.00 N/A
ENST00000592395 N/A N/A N/A 0.472±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592628 N/A N/A N/A N/A N/A N/A N/A 0.426±0.00 N/A N/A N/A N/A N/A N/A
ENST00000593064 N/A N/A N/A N/A 0.423±0.00 N/A N/A N/A N/A N/A N/A 12.247±0.00 5.012±0.00 22.466±0.00
ENST00000610756 12.971±0.00 N/A N/A N/A N/A 1.272±0.00 0.638±0.00 0.799±0.00 N/A N/A N/A N/A N/A 57.224±0.00
ENST00000611869 N/A 8.308±0.00 N/A N/A N/A 2.701±0.00 1.318±0.00 3.173±0.00 N/A N/A 2.297±0.00 9.929±0.00 3.499±0.79 15.919±0.00
ENSG00000252933 ENST00000517124 N/A N/A N/A 0.172±0.00 N/A N/A N/A N/A N/A N/A N/A 0.959±0.00 N/A 0.443±0.00
ENSG00000267059 ENST00000585937 N/A N/A 0.641±0.00 N/A 2.576±0.00 4.274±0.00 2.298±0.00 N/A 1.478±0.00 1.659±0.00 N/A N/A 35.688±0.00 14.409±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000020163 ENSMUST00000020372 1054.928±157.10 1398.805±156.36 232.173±123.61 182.606±70.40 790.563±422.05 1100.937±184.13 2177.173±370.35 1642.910±387.96 760.735±289.98 583.093±26.75 540.406±24.79 598.583±233.85 212.709±77.32 203.097±85.33
ENSMUST00000138428 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000020167 ENSMUST00000020377 11.319±0.00 N/A N/A N/A 9.771±0.00 5.277±0.00 N/A N/A 1.090±0.00 N/A 1.396±0.26 12.122±0.00 3.198±0.00 1.303±0.09
ENSMUST00000020379 14.796±7.39 11.191±1.31 6.780±1.44 10.392±5.74 15.751±8.37 9.333±3.18 4.520±1.33 5.214±2.04 12.110±7.00 14.545±3.67 2.203±0.60 25.423±5.36 7.206±2.05 2.986±0.29
ENSMUST00000105339 5.636±0.00 N/A N/A 13.427±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000105340 N/A 8.967±2.32 N/A N/A N/A 7.937±0.00 N/A N/A N/A N/A N/A 12.060±0.00 N/A 1.017±0.00
ENSMUST00000105341 N/A N/A N/A 3.369±0.00 N/A N/A N/A N/A N/A N/A 1.803±0.00 30.964±0.00 8.464±4.21 0.909±0.00
ENSMUST00000105342 N/A 6.176±0.65 2.735±0.00 14.078±3.17 9.505±0.00 5.299±0.31 N/A 2.410±0.46 5.186±4.18 5.166±0.00 1.075±0.43 12.755±0.60 2.588±0.00 N/A
ENSMUST00000105343 N/A 9.139±3.20 2.352±0.18 N/A 9.270±0.00 6.715±0.40 N/A 2.816±0.00 7.355±3.40 6.673±0.00 1.409±0.41 15.272±6.10 4.569±1.14 1.203±0.00
ENSMUST00000105344 N/A 8.306±0.00 N/A N/A 8.709±0.00 N/A N/A 2.321±0.00 1.442±0.00 N/A N/A N/A 3.352±0.00 N/A
ENSMUST00000105345 N/A 6.225±0.00 2.794±0.00 4.978±0.00 N/A 7.223±0.00 N/A N/A 7.179±5.42 N/A 0.816±0.00 8.244±1.03 N/A N/A
ENSMUST00000105346 8.503±0.00 N/A 3.181±0.13 10.811±0.13 N/A N/A 0.933±0.00 2.280±0.00 4.422±0.28 N/A 1.494±0.82 6.067±0.00 N/A N/A
ENSMUST00000127931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156244 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156990 5.541±0.00 13.611±0.00 N/A N/A 10.682±2.42 N/A 2.705±0.00 N/A N/A N/A N/A N/A N/A N/A

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