C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protease (prosome, macropain) 26S subunit, ATPase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021049 Psmc5-001 ENSMUSG00000020708 10090 + 11:106256154-106263120 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021049
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021049 31.521±5.59 10.286±3.45 72.590±4.45 115.746±54.28 22.695±3.56 20.206±2.63 32.014±0.89 36.034±2.70 58.955±38.52 28.844±4.28 73.229±2.78 36.584±27.36 97.312±43.20 62.223±19.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B9 CIL_0009B9_0002 VISTA 11:105834084-106435839
CIL_0006Q9 CIL_0006Q9_0002 CGP 11:106249142-106263120
CIL_0006QA CIL_0006QA_0002 CGP 11:106256154-106272972

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 ISS proteasome complex
GO:0005102 IPI receptor binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005675 ISA holo TFIIH complex
GO:0005737 ISS cytoplasm
GO:0005838 IDA proteasome regulatory particle
GO:0006200 IEA ATP catabolic process
GO:0008134 ISS transcription factor binding
GO:0016020 IEA membrane
GO:0016234 IEA inclusion body
GO:0017025 IEA TBP-class protein binding
GO:0022624 IDA proteasome accessory complex
GO:0031410 IEA cytoplasmic vesicle
GO:0031531 ISS thyrotropin-releasing hormone receptor binding
GO:0031595 IEA nuclear proteasome complex
GO:0031597 IEA cytosolic proteasome complex
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0070062 IEA extracellular vesicular exosome
GO:0072562 IEA blood microparticle
GO:0090261 IEA positive regulation of inclusion body assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310144 PSMC5-001 protein_coding Homo_sapiens 0 1628
ENST00000375812 PSMC5-201 protein_coding Homo_sapiens 0 1568
ENST00000496846 DKFZP586I1420-001 processed_pseudogene Homo_sapiens 5e-27 126
ENST00000578570 PSMC5-005 retained_intron Homo_sapiens 0 1568
ENST00000579031 PSMC5-014 retained_intron Homo_sapiens 0 917
ENST00000579147 PSMC5-003 retained_intron Homo_sapiens 0 1459
ENST00000579708 PSMC5-008 protein_coding Homo_sapiens 0 492
ENST00000580063 PSMC5-015 retained_intron Homo_sapiens 0 625
ENST00000580265 PSMC5-009 retained_intron Homo_sapiens 1e-24 117
ENST00000580864 PSMC5-004 protein_coding Homo_sapiens 0 1568
ENST00000581764 PSMC5-002 retained_intron Homo_sapiens 0 459
ENST00000581842 PSMC5-018 protein_coding Homo_sapiens 0 808
ENST00000581882 PSMC5-006 protein_coding Homo_sapiens 0 1570
ENST00000582130 PSMC5-011 protein_coding Homo_sapiens 0 673
ENST00000583283 PSMC5-012 retained_intron Homo_sapiens 9.99995e-41 171
ENST00000584320 PSMC5-020 protein_coding Homo_sapiens 0 935
ENST00000584536 PSMC5-013 nonsense_mediated_decay Homo_sapiens 0 403
ENST00000584657 PSMC5-017 retained_intron Homo_sapiens 0 211
ENST00000584880 PSMC5-016 nonsense_mediated_decay Homo_sapiens 0 712
ENST00000585123 PSMC5-019 protein_coding Homo_sapiens 0 983
ENST00000585242 PSMC5-007 nonsense_mediated_decay Homo_sapiens 0 1384
ENST00000589763 RP11-635N19.2-001 processed_pseudogene Homo_sapiens 0 656

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