C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: elongation factor Tu GTP binding domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021306 Eftud2-002 ENSMUSG00000020929 10090 - 11:102838473-102880967 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderHeartKidneyLiverMuscleOvaryTestisENSMUST00000021306
Transcript ID Adipose Bladder Heart Kidney Liver Muscle Ovary Testis
ENSMUST00000021306 3.365±0.00 2.420±0.00 3.149±0.47 2.991±0.26 4.606±2.63 1.560±0.30 6.424±0.00 5.738±2.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0006U5 CIL_0006U5_0002 CGP 11:102835849-102880985
CIL_0006UA CIL_0006UA_0002 CGP 11:102838473-102885216

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003746 IEA translation elongation factor activity
GO:0003924 IEA GTPase activity
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006184 IEA GTP catabolic process
GO:0006414 IEA translational elongation
GO:0015030 IEA Cajal body
GO:0016020 IEA membrane
GO:0016607 IEA nuclear speck
GO:0044822 IEA poly(A) RNA binding
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000017172 eftud2-201 protein_coding Danio_rerio 0 1893
ENSDART00000140067 eftud2-003 protein_coding Danio_rerio 0 1873
ENSDART00000127309 eftud2-002 protein_coding Danio_rerio 0 1267
ENSDART00000130575 eftud2-202 protein_coding Danio_rerio 0 684
ENSDART00000136465 eftud2-001 protein_coding Danio_rerio 0 684
ENST00000402521 EFTUD2-004 protein_coding Homo_sapiens 0 3873
ENST00000426333 EFTUD2-002 protein_coding Homo_sapiens 0 4065
ENST00000585616 EFTUD2-022 processed_transcript Homo_sapiens 0 737
ENST00000585794 EFTUD2-023 retained_intron Homo_sapiens 0 555
ENST00000586276 EFTUD2-008 retained_intron Homo_sapiens 0 870
ENST00000586654 EFTUD2-021 retained_intron Homo_sapiens 0 732
ENST00000587914 EFTUD2-024 retained_intron Homo_sapiens 0 381
ENST00000587957 EFTUD2-019 retained_intron Homo_sapiens 0 307
ENST00000588340 EFTUD2-028 retained_intron Homo_sapiens 2e-33 147
ENST00000588374 EFTUD2-015 nonsense_mediated_decay Homo_sapiens 0 617
ENST00000589211 EFTUD2-029 processed_transcript Homo_sapiens 2e-22 110
ENST00000589475 EFTUD2-018 retained_intron Homo_sapiens 0 231
ENST00000589769 EFTUD2-026 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000589825 EFTUD2-010 retained_intron Homo_sapiens 0 619
ENST00000590105 EFTUD2-013 retained_intron Homo_sapiens 1.99965e-42 176
ENST00000590124 EFTUD2-025 protein_coding Homo_sapiens 0 599
ENST00000590367 EFTUD2-007 retained_intron Homo_sapiens 0 2041
ENST00000590977 EFTUD2-009 retained_intron Homo_sapiens 0 649
ENST00000591382 EFTUD2-006 protein_coding Homo_sapiens 0 4043
ENST00000592408 EFTUD2-012 retained_intron Homo_sapiens 0 340
ENST00000592576 EFTUD2-003 protein_coding Homo_sapiens 0 3417
ENST00000592701 EFTUD2-014 protein_coding Homo_sapiens 0 466
ENST00000593072 EFTUD2-011 protein_coding Homo_sapiens 0 616
ENST00000593200 EFTUD2-017 retained_intron Homo_sapiens 0 527

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