C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gem (nuclear organelle) associated protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021379 Gemin2-001 ENSMUSG00000060121 10090 + 12:59013393-59028470 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021379
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021379 1.287±0.46 2.112±0.48 3.336±0.13 2.492±1.02 1.212±0.49 2.358±0.59 1.589±0.31 1.850±0.46 6.705±2.98 1.923±0.13 2.362±0.32 2.591±1.19 5.186±2.48 2.255±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VW CIL_0003VW_0002 CGP 12:58958383-59028470
CIL_0003VX CIL_0003VX_0002 CGP 12:59013393-59061461

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 IEA spliceosomal complex assembly
GO:0000387 ISS spliceosomal snRNP assembly
GO:0005515 IEA protein binding
GO:0005622 IDA intracellular
GO:0005634 IDA nucleus
GO:0005681 IEA spliceosomal complex
GO:0005730 IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 ISS cytosol
GO:0032797 ISS SMN complex
GO:0034719 ISS SMN-Sm protein complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000250379 GEMIN2-002 protein_coding Homo_sapiens 0 619
ENST00000308317 GEMIN2-001 protein_coding Homo_sapiens 0 1094
ENST00000396249 GEMIN2-003 protein_coding Homo_sapiens 0 931
ENST00000412033 GEMIN2-005 nonsense_mediated_decay Homo_sapiens 0 894
ENST00000418195 GEMIN2P2-001 processed_pseudogene Homo_sapiens 0 488
ENST00000454246 GEMIN2P1-001 processed_pseudogene Homo_sapiens 0 525
ENST00000525153 GEMIN2-004 nonsense_mediated_decay Homo_sapiens 0 612
ENST00000525430 GEMIN2-006 retained_intron Homo_sapiens 0 621
ENST00000527381 GEMIN2-010 protein_coding Homo_sapiens 0 728
ENST00000531684 GEMIN2-011 nonsense_mediated_decay Homo_sapiens 0 726
ENST00000534684 GEMIN2-009 protein_coding Homo_sapiens 0 684
ENST00000572295 GEMIN2P1-001 processed_pseudogene Homo_sapiens 0 525
ENST00000576223 RP11-216N14.10-001 processed_pseudogene Homo_sapiens 0 569

Loading