C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trafficking protein particle complex 6B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021380 Trappc6b-201 ENSMUSG00000020993 10090 - 12:59043093-59061461 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021380
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021380 37.483±15.05 105.388±77.02 44.222±6.90 43.014±9.29 25.346±11.68 45.176±18.10 19.828±3.69 36.958±5.37 23.732±8.85 49.980±37.96 21.359±0.91 43.416±17.31 39.454±8.77 32.078±4.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VX CIL_0003VX_0002 CGP 12:59013393-59061461
CIL_0003VY CIL_0003VY_0002 CGP 12:59043093-59074017

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0008150 ND biological_process
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330149 TRAPPC6B-002 protein_coding Homo_sapiens 0 686
ENST00000347691 TRAPPC6B-001 protein_coding Homo_sapiens 0 385
ENST00000469361 TRAPPC6B-003 retained_intron Homo_sapiens 0 479
ENST00000554018 TRAPPC6B-006 protein_coding Homo_sapiens 0 370
ENST00000555269 TRAPPC6B-007 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000556765 TRAPPC6B-005 nonsense_mediated_decay Homo_sapiens 0 215
ENST00000557764 TRAPPC6B-004 processed_transcript Homo_sapiens 0 303

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