C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: survival of motor neuron 1, telomeric
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000514951 SMN1-002 ENSG00000172062 9606 + 5:70925056-70952567 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000514951
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000514951 0.387±0.00 0.894±0.00 0.195±0.00 0.609±0.25 0.621±0.21 1.191±0.00 0.237±0.05 0.887±0.00 0.744±0.31 1.409±0.90 0.063±0.00 0.833±0.68 0.551±0.11 1.205±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZD CIL_0004ZD_0001 CGP 5:70900665-70953942
CIL_0004ZC CIL_0004ZC_0001 CGP 5:70925030-71025114

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022147 Smn1-001 protein_coding Mus_musculus 0 327
ENSMUST00000134514 Smn1-002 retained_intron Mus_musculus 0 283
ENSMUST00000140745 Smn1-006 nonsense_mediated_decay Mus_musculus 0 235
ENSMUST00000125572 Smn1-007 retained_intron Mus_musculus 2.94273e-44 183
ENSMUST00000143937 Smn1-008 protein_coding Mus_musculus 2e-40 171
ENSDART00000127956 smn1-201 protein_coding Danio_rerio 1e-17 95
ENSDART00000028099 smn1-001 protein_coding Danio_rerio 1e-17 95

Loading