C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023019 Trmu-001 ENSMUSG00000022386 10090 + 15:85879320-85897392 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023019
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023019 3.682±0.40 2.510±1.12 5.267±1.20 11.942±1.53 2.692±0.86 3.105±0.66 3.075±0.78 4.613±0.95 5.871±4.10 2.673±0.74 2.964±0.51 3.823±1.20 3.160±1.49 1.915±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BF CIL_0008BF_0002 VISTA 15:85812646-86415385
CIL_00024F CIL_00024F_0002 CGP 15:85859707-85897394
CIL_00024N CIL_00024N_0002 CGP 15:85879312-86033777

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 IEA tRNA binding
GO:0003674 ND molecular_function
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0008033 IEA tRNA processing
GO:0008150 ND biological_process
GO:0016783 IEA sulfurtransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290846 TRMU-001 protein_coding Homo_sapiens 0 1358
ENST00000381019 TRMU-007 protein_coding Homo_sapiens 0 1149
ENST00000381021 TRMU-004 nonsense_mediated_decay Homo_sapiens 0 939
ENST00000441818 TRMU-002 nonsense_mediated_decay Homo_sapiens 0 736
ENST00000453630 TRMU-005 nonsense_mediated_decay Homo_sapiens 0 743
ENST00000456595 TRMU-003 nonsense_mediated_decay Homo_sapiens 0 527
ENST00000457572 TRMU-006 nonsense_mediated_decay Homo_sapiens 0 743
ENST00000465378 TRMU-012 processed_transcript Homo_sapiens 0 440
ENST00000470831 TRMU-010 retained_intron Homo_sapiens 6.99949e-42 176
ENST00000485175 TRMU-014 processed_transcript Homo_sapiens 0 438
ENST00000485559 TRMU-009 retained_intron Homo_sapiens 0 387
ENST00000491612 TRMU-008 retained_intron Homo_sapiens 0 292

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