C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vitamin D receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023119 Vdr-001 ENSMUSG00000022479 10090 - 15:97854425-97908310 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023119
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023119 0.466±0.26 2.542±1.04 0.548±0.01 0.064±0.06 3.148±0.29 79.808±3.38 0.628±0.19 41.876±5.19 0.024±0.01 2.214±0.20 0.039±0.03 1.377±0.32 1.717±0.96 1.503±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DI CIL_0003DI_0003 CGP 15:97792664-97910630
CIL_0005YK CIL_0005YK_0002 CGP 15:97854425-97970286

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000902 IEA cell morphogenesis
GO:0001501 IMP skeletal system development
GO:0003677 ISO DNA binding
GO:0003707 IEA steroid hormone receptor activity
GO:0004879 IDA ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006816 IMP calcium ion transport
GO:0006874 IMP cellular calcium ion homeostasis
GO:0007275 IMP multicellular organismal development
GO:0007595 IMP lactation
GO:0008270 IEA zinc ion binding
GO:0008285 IEA negative regulation of cell proliferation
GO:0008434 IEA calcitriol receptor activity
GO:0009887 IMP organ morphogenesis
GO:0010628 IEA positive regulation of gene expression
GO:0010839 IEA negative regulation of keratinocyte proliferation
GO:0010980 IEA positive regulation of vitamin D 24-hydroxylase activity
GO:0030522 IDA intracellular receptor signaling pathway
GO:0038183 IEA bile acid signaling pathway
GO:0038186 IEA lithocholic acid receptor activity
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045618 IEA positive regulation of keratinocyte differentiation
GO:0045892 ISO negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046697 IEA decidualization
GO:0046965 IEA retinoid X receptor binding
GO:0050892 IMP intestinal absorption
GO:0060058 IMP positive regulation of apoptotic process involved in mammary gland involution
GO:0060558 IMP regulation of calcidiol 1-monooxygenase activity
GO:0060745 IMP mammary gland branching involved in pregnancy
GO:0070561 IEA vitamin D receptor signaling pathway
GO:0070644 IEA vitamin D response element binding
GO:1902098 IEA calcitriol binding
GO:1902121 IEA lithocholic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000063214 VDR (1 of 2)-201 protein_coding Danio_rerio 0 387
ENST00000229022 VDR-201 protein_coding Homo_sapiens 0 1493
ENST00000395324 VDR-001 protein_coding Homo_sapiens 0 1493
ENST00000546653 VDR-007 protein_coding Homo_sapiens 0 765
ENST00000547065 VDR-003 nonsense_mediated_decay Homo_sapiens 0 1242
ENST00000548664 VDR-006 protein_coding Homo_sapiens 0 466
ENST00000549336 VDR-004 protein_coding Homo_sapiens 0 1493
ENST00000550314 VDR-008 protein_coding Homo_sapiens 0 477
ENST00000550325 VDR-002 protein_coding Homo_sapiens 0 1493

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