C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vitamin D (1,25- dihydroxyvitamin D3) receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000550314 VDR-008 ENSG00000111424 9606 - 12:47857648-47882935 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverLungENST00000550314
Transcript ID Liver Lung
ENST00000550314 1.575±0.00 1.566±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DI CIL_0003DI_0002 CGP 12:47782722-47943048
CIL_0005YK CIL_0005YK_0001 CGP 12:47841537-47968878

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0008434 IEA calcitriol receptor activity
GO:0043565 IEA sequence-specific DNA binding
GO:0070561 IEA vitamin D receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023119 Vdr-001 protein_coding Mus_musculus 0 477
ENSMUST00000126568 Vdr-002 protein_coding Mus_musculus 0 350
ENSMUST00000173104 Vdr-006 protein_coding Mus_musculus 0 261
ENSMUST00000174633 Vdr-004 protein_coding Mus_musculus 9e-31 137
ENSMUST00000173611 Vdr-005 protein_coding Mus_musculus 3e-26 122

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