C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transferrin receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023486 Tfrc-001 ENSMUSG00000022797 10090 + 16:32608920-32632794 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023486
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023486 2.801±0.89 2.382±0.53 3.036±0.37 4.207±1.78 2.910±0.48 6.724±1.88 14.307±3.89 5.264±0.90 46.123±53.36 7.754±0.56 25.111±2.65 3.365±1.68 76.306±54.82 3.030±0.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QR CIL_0008QR_0002 VISTA 16:32268412-32870796
CIL_0007CJ CIL_0007CJ_0003 CGP 16:32608920-32683493

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 ISO double-stranded RNA binding
GO:0004998 TAS transferrin receptor activity
GO:0005381 TAS iron ion transmembrane transporter activity
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005615 IEA extracellular space
GO:0005768 IDA endosome
GO:0005886 IDA plasma membrane
GO:0005905 IDA coated pit
GO:0006879 IMP cellular iron ion homeostasis
GO:0006898 IEA receptor-mediated endocytosis
GO:0009897 IDA external side of plasma membrane
GO:0009986 ISO cell surface
GO:0016021 IEA integral component of membrane
GO:0016023 ISO cytoplasmic membrane-bounded vesicle
GO:0030316 IMP osteoclast differentiation
GO:0031982 IEA vesicle
GO:0033572 IEA transferrin transport
GO:0034755 TAS iron ion transmembrane transport
GO:0042802 IEA identical protein binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding
GO:0045780 IDA positive regulation of bone resorption
GO:0048471 IDA perinuclear region of cytoplasm
GO:0055037 ISO recycling endosome
GO:0070062 IDA extracellular vesicular exosome
GO:0072562 IEA blood microparticle
GO:0097286 IEA iron ion import

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000021095 tfr1b-201 protein_coding Danio_rerio 5e-17 95
ENSDART00000137851 tfr1b-001 protein_coding Danio_rerio 5e-17 95
ENST00000360110 TFRC-001 protein_coding Homo_sapiens 0 2036
ENST00000392396 TFRC-002 protein_coding Homo_sapiens 0 2036
ENST00000420415 TFRC-003 protein_coding Homo_sapiens 0 1764
ENST00000421258 TFRC-005 nonsense_mediated_decay Homo_sapiens 0 279
ENST00000463356 TFRC-016 processed_transcript Homo_sapiens 0 196
ENST00000464011 TFRC-006 processed_transcript Homo_sapiens 0 281
ENST00000465288 TFRC-009 processed_transcript Homo_sapiens 0 353
ENST00000475593 TFRC-011 retained_intron Homo_sapiens 0 468
ENST00000482479 TFRC-013 retained_intron Homo_sapiens 7e-32 141
ENST00000483983 TFRC-012 retained_intron Homo_sapiens 0 318

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