C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 71
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023710 Krt71-001 ENSMUSG00000051879 10090 - 15:101733950-101743109 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonLiverMuscleOvaryPlacentaENSMUST00000023710
Transcript ID Adipose Brain Breast Colon Liver Muscle Ovary Placenta
ENSMUST00000023710 0.012±0.00 0.042±0.01 0.150±0.05 0.028±0.01 0.003±0.00 1.504±1.48 0.044±0.02 0.002±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_0010 CGP 15:101707070-101743109
CIL_00033Q CIL_00033Q_000W CGP 15:101733950-101763504

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0031069 ISS hair follicle morphogenesis
GO:0045095 IDA keratin filament
GO:0045109 ISS intermediate filament organization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257951 KRT84-001 protein_coding Homo_sapiens 9.80909e-45 185
ENST00000267119 KRT71-001 protein_coding Homo_sapiens 0 1866
ENST00000293745 KRT72-201 protein_coding Homo_sapiens 0 1077
ENST00000305620 KRT74-001 protein_coding Homo_sapiens 0 1142
ENST00000305748 KRT73-001 protein_coding Homo_sapiens 0 1474
ENST00000332411 KRT76-001 protein_coding Homo_sapiens 0 496
ENST00000341809 KRT77-001 protein_coding Homo_sapiens 0 507
ENST00000354310 KRT72-002 protein_coding Homo_sapiens 0 291
ENST00000396270 KRT8P39-001 processed_pseudogene Homo_sapiens 4e-28 130
ENST00000417996 KRT3-001 protein_coding Homo_sapiens 0 536
ENST00000453110 KRT8P17-001 processed_pseudogene Homo_sapiens 3e-39 167
ENST00000463294 KRT8P13-001 processed_pseudogene Homo_sapiens 0 252
ENST00000473150 KRT8P25-001 processed_pseudogene Homo_sapiens 7e-36 156
ENST00000537672 KRT72-001 protein_coding Homo_sapiens 0 1077
ENST00000546384 KRT74-002 retained_intron Homo_sapiens 0 294
ENST00000546934 KRT73-002 retained_intron Homo_sapiens 0 1205
ENST00000549343 KRT74-003 protein_coding Homo_sapiens 0 861
ENST00000550829 KRT72-003 nonsense_mediated_decay Homo_sapiens 0 893
ENST00000552855 KRT73-003 protein_coding Homo_sapiens 0 619
ENST00000553168 KRT77-002 nonsense_mediated_decay Homo_sapiens 8e-17 94

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