C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: keratin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417996 KRT3-001 ENSG00000186442 9606 - 12:52789685-52796117 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENST00000417996
Transcript ID Brain Ovary Placenta Testis
ENST00000417996 0.012±0.00 0.083±0.00 0.015±0.00 0.016±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033Q CIL_00033Q_000H CGP 12:52768155-52796117
CIL_00033Q CIL_00033Q_000L CGP 12:52789685-52814551

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IMP:IEA structural molecule activity
GO:0005882 NAS:IEA intermediate filament
GO:0030855 ISS epithelial cell differentiation
GO:0045095 TAS keratin filament
GO:0045104 IMP intermediate filament cytoskeleton organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100179 Krt76-001 protein_coding Mus_musculus 0 996
ENSMUST00000023788 Krt6a-201 protein_coding Mus_musculus 0 665
ENSMUST00000023709 Krt5-001 protein_coding Mus_musculus 0 641
ENSMUST00000023786 Krt6b-201 protein_coding Mus_musculus 0 627
ENSMUST00000063292 Krt73-001 protein_coding Mus_musculus 0 558
ENSMUST00000023710 Krt71-001 protein_coding Mus_musculus 0 536
ENSMUST00000071104 Krt72-001 protein_coding Mus_musculus 0 529
ENSMUST00000023799 Krt79-001 protein_coding Mus_musculus 0 464
ENSMUST00000087996 Krt77-001 protein_coding Mus_musculus 0 407
ENSMUST00000068904 Krt7-001 protein_coding Mus_musculus 0 353
ENSMUST00000100184 Gm5478-201 protein_coding Mus_musculus 0 298
ENSMUST00000131069 Krt7-002 retained_intron Mus_musculus 0 292
ENSMUST00000179022 Lmnb2-201 protein_coding Mus_musculus 0.00000000000005 84
ENSMUST00000105332 Lmnb2-002 protein_coding Mus_musculus 0.00000000000005 84
ENSMUST00000057623 Lmnb2-001 protein_coding Mus_musculus 0.00000000000005 84

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