C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor EB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373033 TFEB-005 ENSG00000112561 9606 - 6:41683980-41735608 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000373033
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000373033 6.598±0.00 7.900±0.00 4.029±3.40 4.636±0.00 12.710±0.00 5.399±4.53 5.244±5.07 1.370±0.00 5.134±4.78 26.463±22.11 5.860±4.41 4.798±1.44 4.017±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F3 CIL_0008F3_0001 VISTA 6:41112821-41713777
CIL_0007QG CIL_0007QG_0001 VISTA 6:41166717-41767957
CIL_0008IB CIL_0008IB_0001 VISTA 6:41169077-41770286
CIL_0008XI CIL_0008XI_0001 VISTA 6:41187113-41790491
CIL_00093V CIL_00093V_0001 VISTA 6:41255486-41855939
CIL_000963 CIL_000963_0001 VISTA 6:41292979-41894337
CIL_00028Y CIL_00028Y_0002 CGP 6:41636882-41736259

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001892 ISS embryonic placenta development
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 NAS:IEA regulation of transcription, DNA-templated
GO:0006914 IEA autophagy
GO:0006959 IEA:ISS humoral immune response
GO:0007040 IMP lysosome organization
GO:0010508 IMP positive regulation of autophagy
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086932 Tfeb-002 protein_coding Mus_musculus 0 2178
ENSMUST00000024786 Tfeb-001 protein_coding Mus_musculus 0 1905
ENSMUST00000113288 Tfeb-003 protein_coding Mus_musculus 0 1905
ENSMUST00000146782 Tfeb-009 protein_coding Mus_musculus 0 1336
ENSMUST00000113284 Tfeb-011 protein_coding Mus_musculus 0 1037
ENSMUST00000140715 Tfeb-007 retained_intron Mus_musculus 0 523
ENSMUST00000124765 Tfeb-008 processed_transcript Mus_musculus 0 470
ENSMUST00000141631 Tfeb-006 protein_coding Mus_musculus 0 424
ENSMUST00000159641 Tfeb-013 protein_coding Mus_musculus 0 326
ENSMUST00000160373 Tfeb-014 protein_coding Mus_musculus 0 324
ENSMUST00000130208 Tfeb-005 protein_coding Mus_musculus 0 320
ENSMUST00000162719 Tfeb-015 retained_intron Mus_musculus 0 303
ENSMUST00000125177 Tfeb-004 protein_coding Mus_musculus 0 285
ENSMUST00000126258 Tfeb-010 protein_coding Mus_musculus 7e-38 163
ENSMUST00000137845 Tfeb-012 protein_coding Mus_musculus 9e-37 159

Loading